Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3388 ATGGCATCAATCACCATAACCTCATTGCTCTTCTTTTCCTTGATCACTTTGTCATTGGCAATGGACACGTCCATGCGTAGCAATGAGGAGGTCATGACCATGTACGAGGAATGGTTGGTAAAACACCATAAGGTGTATAATGGTTTAGGAGAGAAAGATCAAAGGTTTGAAATTTTTAAGGATAATTTAGGATTCATCGATGAGCACAATGCTCAAAATTACACATACAAAGTAGGGTTGAACAAGTTTGCCGATATGACCAACGAGGAATATCGCAACATGTATTTGGGTACGAAGAATGATGCCAAACGTAACGTTATGAAAATCAAGATCACTACCGGTCACCGGTATGCTTTTAATTCCGGTGATCGGTTGCCGGTGCATGTTGATTGGAGGTCGAAAGGTGCAGTTGCTCATATCAAAGATCAAGGAAGTTGTGGAAGTTGTTGGGCGTTCTCAACAATAGCCACAGTGGAAGCTATAAACAAGATAGTCACAGGGAAGCTTGTGTCTTTGTCAGAACAAGAGCTTGTTGATTGTGACAGAGCTTTCAATGAAGGCTGCAATGGTGGTCTCATGGACTATGCCTTTGAATTCATCGTTGAAAATGGTGGCATAGACACTGAACAAGACTATCCATATAAGGGATTTGAGGGTAGATGTGATCCAACAAGGAAAAATGCCAAGGTAGTGAGCATTGATGGATATGAAGATGTTCCAGCTTATAATGAAAATGCATTAAAGAAAGCTGTTTCTCATCAACCTGTGAGCGTTGCTATTGAGGCCGGTGGCCGGGCTTTGCAACTCTATCAATCGGGTGTATTTACTGGTAGATGTGGAACAAACTTGGATCATGGTGTGGTTGTTGTTGGATATGGTTCTGAAAATGGTGTTGATTATTGGTTGGTTAGGAATTCATGGGGTACAAATTGGGGTGAAGATGGTTACTTCAAGTTGGAACGTAATGTGAAAAAGATCAATACAGGAAAGTGTGGAATTGCAATGCAAGCCTCATACCCAGTGAAGTATGGTCAAAATTCAGCTTATGAAAACAATGAAGAGCTTGTTAGCAGTGCTTGA 1080 0.4111 MASITITSLLFFSLITLSLAMDTSMRSNEEVMTMYEEWLVKHHKVYNGLGEKDQRFEIFKDNLGFIDEHNAQNYTYKVGLNKFADMTNEEYRNMYLGTKNDAKRNVMKIKITTGHRYAFNSGDRLPVHVDWRSKGAVAHIKDQGSCGSCWAFSTIATVEAINKIVTGKLVSLSEQELVDCDRAFNEGCNGGLMDYAFEFIVENGGIDTEQDYPYKGFEGRCDPTRKNAKVVSIDGYEDVPAYNENALKKAVSHQPVSVAIEAGGRALQLYQSGVFTGRCGTNLDHGVVVVGYGSENGVDYWLVRNSWGTNWGEDGYFKLERNVKKINTGKCGIAMQASYPVKYGQNSAYENNEELVSSA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3388 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Mtr4g3388 359 SMART Inhibitor_I29_2 35 91 IPR013201 -
Mtr4g3388 359 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Mtr4g3388 359 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 19 348 - -
Mtr4g3388 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Mtr4g3388 359 SUPERFAMILY Cysteine proteinases 27 341 IPR038765 -
Mtr4g3388 359 Gene3D Cysteine proteinases 14 343 - -
Mtr4g3388 359 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
Mtr4g3388 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Mtr4g3388 359 Pfam Cathepsin propeptide inhibitor domain (I29) 35 91 IPR013201 -
Mtr4g3388 359 CDD Peptidase_C1A 126 340 IPR039417 -
Mtr4g3388 359 PANTHER CYSTEINE PROTEASE 19 348 - -
Mtr4g3388 359 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Mtr4g3388 359 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Mtr4g3388 359 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3388 Mtr-Chr4 47231979 47234929 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0485 1 5603426 5608127 Mtr4g3388 4 47231979 47234929 ECH
Mtr3g3668 3 50558960 50564425 Mtr4g3388 4 47231979 47234929 ECH
Mtr4g3388 4 47231979 47234929 Mtr4g3388 4 47231979 47234929 ECH