Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2942 ATGTTTGGTAACTGTGTTGATGAGAAAACGGTAATCACTTGTAACAAATTGACACAGGCTGAGATAGATGATCTTAAGGTTTCAATGGCTTCTTCAAGTGGTGGTGGAAATAGGGTTATGGAAAAACCAGGTCAAGAGCTTCTTCAACAGCAACAACAAGCTTTAAGGTGTCCACGTTGTGATTCATCAAACACTAAATTCTGTTACTATAATAACTATAGTTTATCACAACCAAGACACTTCTGCAAAGCCTGTAAAAGATATTGGACAAGAGGTGGAACACTTAGAAACGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTCTTAAACGACCAAATCACTCTTCTTCAAATATTGATACTGCTACTGCTTCTCCTTCTTCTTCAACTCCTAATAGTGCTAATTCAAACCCTCCTTCTCAACAACAACAACAACAACACCATAGTTTTGATATTGCTTCTACCTCAAACCATATCAATTCTCTTCTTTATGGTAACTCTTCTTGTCATGATGTGATGAACTTTCCTTTTGCAACAAGGTTCAATTCTACAAGAGTTTCAAGTTCTTCTTCTGGTTATGATCATCTTCAGCAGCAGCAGCCTCAGGTGAATGGTCTTGGATTAGGTTTTTCATCTGGGGTAGTTAATCTTAATCATCATGATGATTACAGAAATGGGTTTGGTTCAAATAATAACAACTACAGTTCCATCTTTGGTTCTTCTTCTACTTCAACTAACGATAACTCCATGGCCTCTACTACTCCAGTTATGGCTTCTCTACTTAACTCTACACTACTGCAACAGAAATTCATGAGTGCAGCTGGTGGTGGAATGAAAGGTGGTGATCCTTTTCATCATGAGGCTGGGATGATGGATTCAAAAGAAGTGAAATTAGGTGAAGGATTACAAAACAGGTTGGATCAGTGGAGTAATAATATGAATGTGCCTAATGGTGGTGTTGCTTTTCAAAACCAGATGGAGAATATGGGTTTGTCAGATTCTTCTTCTCTTTATTGGAATAACAACAACACCAACAACAACAACAACAACAACAACAACAACAACACTGCAGCAACAGGTTTGAGCAGTGTTTGGAATACTGATCATCAACCTAATAATATTGGTCATAATTCAGTTACTTCTCTGATCTAG 1155 0.3775 MFGNCVDEKTVITCNKLTQAEIDDLKVSMASSSGGGNRVMEKPGQELLQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPNHSSSNIDTATASPSSSTPNSANSNPPSQQQQQQHHSFDIASTSNHINSLLYGNSSCHDVMNFPFATRFNSTRVSSSSSGYDHLQQQQPQVNGLGLGFSSGVVNLNHHDDYRNGFGSNNNNYSSIFGSSSTSTNDNSMASTTPVMASLLNSTLLQQKFMSAAGGGMKGGDPFHHEAGMMDSKEVKLGEGLQNRLDQWSNNMNVPNGGVAFQNQMENMGLSDSSSLYWNNNNTNNNNNNNNNNNTAATGLSSVWNTDHQPNNIGHNSVTSLI* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2942 384 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Mtr4g2942 384 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 13 349 - -
Mtr4g2942 384 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Mtr4g2942 384 MobiDBLite consensus disorder prediction 334 358 - -
Mtr4g2942 384 Pfam Dof domain, zinc finger 53 109 IPR003851 GO:0003677|GO:0006355
Mtr4g2942 384 MobiDBLite consensus disorder prediction 116 150 - -
Mtr4g2942 384 MobiDBLite consensus disorder prediction 100 150 - -
Mtr4g2942 384 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 349 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2942 Mtr-Chr4 43144425 43146592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2942 55 365 C2C2-Dof Transcription Factor Family AT1G28310 37.461 6.23e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr4g2942 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2942 - - cam:101512658 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2942 4 43144425 43146592 Mtr4g2942 4 43144425 43146592 ECH
Mtr4g2942 4 43144425 43146592 Mtr2g0391 2 3926694 3927809 PCT