Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2773 ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCAACAATTGTTAACATGATGCAAGGGCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGCGCAAAATGCAGTAGATTTCCGGCTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCATGTTTACGTGGTACTGGTCCTAATGTGAGCTTTAATGGCTGGAATACCGGTGAACCCAGTTCTGGACTGAATCTGGTCAACCAAGTCAACGATGATGGTCTAAAATCTGAACAAAGGTTGTCTTCGTCATGCAGTGCTATTGCTGAGGATGGTCTAAGACCCGAGGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCTTCCTTTTTGCAAGGTTCCAGCTCCAATCATACAGCCCAAGGTATTAATTTTGGTATGGAGCACATTGCTAACTCATCTGATCGCGGGAAAGGTAAAGAAACTGGTAGCGGTGTTAATAACAACGATCCTTTTGGATTAGATAGAGAGAAGACATCAATTGGCAGTTCTTCATTCAACCAAACAGGTGCTTCATCAGCAAGCTCTGGGTACATGGCATGGGGAGATAGTGGCAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAAAGAAAGGCCCTTGAAGATAGTTCTATGCAACTGTGTACTGGAGGAAGCTCGAGTTCCCTTGTACAATCTGAAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTCCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGTGAGACAAGAAGCTTCCAATGCGTTTCCTTCAATGGTAAGTATTGCGGAAAATGTGGAAAGGCCTCTACGAAACTTTGATAGGAGAATGACCCATCTACATCATCCGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTGCTAGACATCATAATTATCCTTCTCCGCATCAAATACCCGGCTCTCTCTCATTTAACGAATCCTTGGATTTAAGGTTAGCAGCTGGAGTAACAGCTGCTAATTCTGCTGTGCCGCAAAACCAGTCACCATCCCTGCACATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGGCCAGATCTTCAAGTTCTTATAGCTCAGGAGAAAGAGCAGTACGTGATGATTTTAATTTAAGAATCTTCCCAAGAGATAGTACCGAGCATCCCATGAACATGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATTCATCTTCTAGTAATTTGAACAATGCTGGAGGCATACCTCCTCCATCCTGGATTGGATCTAGTTCAAACGTCCACTCGTTACCTAATCCTAGCTGGACATTTAACCATGAAGTCCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCCTGGTCCCTTTTTCCTTCAATCAGCTCAGCATCTGGTACTCATAATGGTCATTCCTCCTCTACTTCCGGCCCTCCTTCATTTTCTCAGGGTTCTAGTAGTAATCAACCACATCCAAGACCATCATTTATGACGGAAAGAAGGGGTGGTGATGTTCTCTCTGCTCCTCATTCATTGCGAACATTACCCTTTGACAATGAGGGGAGACGCCGGCTCATATCTGAGATTCGCCAAGTCCTGCTAGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGACGTTGATAATATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGACGTAAGCACTGGACTGAGTGAAGATATAATTAATAAGTTGATGAAACAGCGATTTTACATGTCTCTCATGACAGAGTCTTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGTTGATGGACAAAATCTCGGTTTGCTAGATTGTGGGCACGAGTTCCACAGTAACTGCATCACACAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACGGCCTTGGCCTCGTGA 2100 0.4419 MQGQRRTIGSFPTIVNMMQGPSSNGTDMNHQSSLNHAQNAVDFRLSDYRGSSGETACLRGTGPNVSFNGWNTGEPSSGLNLVNQVNDDGLKSEQRLSSSCSAIAEDGLRPEERQLLGNQSRIHPSFLQGSSSNHTAQGINFGMEHIANSSDRGKGKETGSGVNNNDPFGLDREKTSIGSSSFNQTGASSASSGYMAWGDSGSSSSSLANWGPSCKRKALEDSSMQLCTGGSSSSLVQSENGYWLTDSVDLNVPGSLGDLSPLEDFRVTSPPFQQNTRNEVRQEASNAFPSMVSIAENVERPLRNFDRRMTHLHHPESVPLNLTSTGSARHHNYPSPHQIPGSLSFNESLDLRLAAGVTAANSAVPQNQSPSLHMHPFPWNRAANPRVARSSSSYSSGERAVRDDFNLRIFPRDSTEHPMNMPASSGHEPAGWYSSSSNLNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPTENLQRVSEFSPWSLFPSISSASGTHNGHSSSTSGPPSFSQGSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFDNEGRRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLLDCGHEFHSNCITQWLMQKNLCPICKTTALAS* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2773 699 CDD RING-H2_TTC3 651 693 - -
Mtr4g2773 699 ProSiteProfiles Zinc finger RING-type profile. 652 693 IPR001841 -
Mtr4g2773 699 MobiDBLite consensus disorder prediction 412 435 - -
Mtr4g2773 699 Pfam Ring finger domain 652 693 IPR001841 -
Mtr4g2773 699 MobiDBLite consensus disorder prediction 493 524 - -
Mtr4g2773 699 MobiDBLite consensus disorder prediction 174 192 - -
Mtr4g2773 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 699 IPR045191 GO:0061630
Mtr4g2773 699 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 699 - -
Mtr4g2773 699 SUPERFAMILY RING/U-box 633 696 - -
Mtr4g2773 699 SMART ring_2 652 692 IPR001841 -
Mtr4g2773 699 MobiDBLite consensus disorder prediction 146 192 - -
Mtr4g2773 699 MobiDBLite consensus disorder prediction 493 542 - -
Mtr4g2773 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 697 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2773 Mtr-Chr4 41431268 41436516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2773 1 699 C3H Transcription Factor Family AT2G15530 36.425 1.54e-101 325
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2773 4 41431268 41436516 Mtr4g2773 4 41431268 41436516 ECH
Mtr1g0497 1 5797836 5804489 Mtr4g2773 4 41431268 41436516 ECH