Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2621 ATGTCAGAGGTAAAAGACCCTGCGATAAAGCTCTTTGGCAGGACAATTCCGCTTCTTCCACTGATCATCCCTGCCAACGACTCTTCATTTCCCTCTTCTTCTCCGCCAGAATTCACCTCTGCAATACAACATGAAACTGAGGAACCATCAAGGAAAGAACTAATTACAGCACAAGATGATGAAGCCTCGCAAAAAACTACCGAGGATTTAAGAGCTCTCACAACATCTTCAGTTGTACATGAGAATCCTCCTAAGACTCCATCAGCTGAAACCGAGAATTCTTTATTGAAATCTTCTACAAATGTAGAACAAAGCGAGACTAGTGTTTCTGAAGAAAAAACTTTGAAGAAACCTGACAAAATAATTCCATGCCCGCGATGCAATAGCATGGACACCAAATTTTGTTACTTCAACAATTACAATGTCAACCAGCCTCGTCATTTTTGTAAGAAATGTCAAAGATATTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGAGCTGGTCGCCGCAAGAACAAGAACTTATCTACCTCGCATTATCGACACTTGATAATTCCAGAGGGAGCTAAACTTAATTCCCCTAATGGAATACATAGTTTGGGAAATGGAGCAGCTGTTTTGACGTTTGATTCAAATCCTCCACTTTGCAACACCATGGCTTCTGTATTGAACATCGCTGAAAGAACTCAAAATTGTGTGTCAAATGGTTTTCATCATGCAAGTTCGTATGGTGGGGAAAATGATCACTCAATTGGAGTTTCGGTTACGGCTTCAAATTCATCAGAGAGAAAAAGCCACACCAGCACAAATGGGTTAGTGGATAAAGGAGTTGAAGGTTTCCCTCCTCAGTTACAACATATTCCAAGTCCCTTTTTGCCTTACACATGGAATTCTGCAATGCCTCCTCCTACCTTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCCGTAACTCCACCTGCATATTGGGGTTGTATGCCACCTCCATGGAATATACCATGCATCTCACCAGGAAGTGCTTCTGTTAATGAAAGTGACTCTGCTCATAGTTCTGTACCGACTTTGGGGAAACACTCAAGGGATGGAAACATCATTACCTCAGTCAACTCACCAAAAGAAAAGCCTGAAACTGAACACAATAGTACCGAAAGCAGCGTTTTGATCCCAAAGACACTTAGATTTGATGACCCAAGTGAAGCTGCAAAGAGTTCATTATGGTCAAAGCTTGGGATCAATAATGACAAGGCCAATTCTCTCAATGGAGGAGGCATGTTCAATGGATTTCAGTCCAAGGGAAAGGACATGAATCACTCGGTTGGAACGTCACCGCTGATGTATGCCAACCCTGCGGCTTTATCGCGGTCTCGTACCTTTCATGAGGAAACCTAG 1398 0.4242 MSEVKDPAIKLFGRTIPLLPLIIPANDSSFPSSSPPEFTSAIQHETEEPSRKELITAQDDEASQKTTEDLRALTTSSVVHENPPKTPSAETENSLLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPEGAKLNSPNGIHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYGGENDHSIGVSVTASNSSERKSHTSTNGLVDKGVEGFPPQLQHIPSPFLPYTWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCISPGSASVNESDSAHSSVPTLGKHSRDGNIITSVNSPKEKPETEHNSTESSVLIPKTLRFDDPSEAAKSSLWSKLGINNDKANSLNGGGMFNGFQSKGKDMNHSVGTSPLMYANPAALSRSRTFHEET* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2621 465 ProSitePatterns Zinc finger Dof-type signature. 124 160 IPR003851 GO:0003677|GO:0006355
Mtr4g2621 465 MobiDBLite consensus disorder prediction 344 390 - -
Mtr4g2621 465 MobiDBLite consensus disorder prediction 344 374 - -
Mtr4g2621 465 MobiDBLite consensus disorder prediction 29 43 - -
Mtr4g2621 465 ProSiteProfiles Zinc finger Dof-type profile. 122 176 IPR003851 GO:0003677|GO:0006355
Mtr4g2621 465 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 465 - -
Mtr4g2621 465 PANTHER CYCLIC DOF FACTOR 2 1 465 IPR045174 GO:0003700|GO:0006355
Mtr4g2621 465 MobiDBLite consensus disorder prediction 68 108 - -
Mtr4g2621 465 MobiDBLite consensus disorder prediction 44 67 - -
Mtr4g2621 465 MobiDBLite consensus disorder prediction 29 115 - -
Mtr4g2621 465 Pfam Dof domain, zinc finger 120 176 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2621 Mtr-Chr4 39725931 39729380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2621 1 464 C2C2-Dof Transcription Factor Family AT3G47500 40.695 2.52e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr4g2621 zf-Dof 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2621 - - gmx:100813315 555.058