Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2143 ATGGAAAAGATGCATTCAACACAATTAGGGGAAGAAGAAGTGTTAAAGGGTCCAAAATGTCAAGACTGTGGGAACCAAGCAAAGAAGGATTGTGCATACTCAAGGTGCAGAAGTTGCTGCAAAAACAAAGGTTTTAACTGCCATACACATATCAGAAGCACTTGGATTCCTGCCGATAGAAGGCGTCACAGAATGGATCATCCTTCTGATCAGCACCACCTTCATGAACATAAAAGGCACAAGCAGATCAACACTATTTCAAGTTCTGATGAGTTCAAATTTCCGGCTGTTACGAGTTCCATGACCACATTGACATGTGTTCAGGTGCGCTCTATGGACGAAACGGTCAATGAAACGGCCTATCAAACAAGTGTAGAAATTGGAGGACATGTATTTAGTGGCATTCTTTATGATCAAGGCCCTGATGAACAAAGCTTCAATAATATACACCCTCTTGATCAGCAACAAAATCTCAATCTTTTTAGTAGTAATGTAATCCACACCGGTGATGATGGTGCAAGTGCAAGTGCAACTATAGCTGCTACTGCTTCTCATCGTCGCCTTCTATATCCTCCACCGCATCCATTACCTTCTTTCAGGCCCGGTATGCCATATTAA 618 0.4223 MEKMHSTQLGEEEVLKGPKCQDCGNQAKKDCAYSRCRSCCKNKGFNCHTHIRSTWIPADRRRHRMDHPSDQHHLHEHKRHKQINTISSSDEFKFPAVTSSMTTLTCVQVRSMDETVNETAYQTSVEIGGHVFSGILYDQGPDEQSFNNIHPLDQQQNLNLFSSNVIHTGDDGASASATIAATASHRRLLYPPPHPLPSFRPGMPY* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2143 205 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 7 200 IPR007818 GO:0003700|GO:0006355
Mtr4g2143 205 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 19 61 IPR006510 -
Mtr4g2143 205 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 93 141 IPR006511 -
Mtr4g2143 205 PANTHER BNAC01G23660D PROTEIN 7 200 - -
Mtr4g2143 205 Pfam Domain of unknown function (DUF702) 18 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2143 Mtr-Chr4 34928039 34929383 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mtr4g2143 DUF702 6.2e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2143 4 34928039 34929383 Mtr4g2143 4 34928039 34929383 ECH
Mtr1g0667 1 7487997 7489816 Mtr4g2143 4 34928039 34929383 ECH
Mtr3g4232 3 56187417 56189548 Mtr4g2143 4 34928039 34929383 ECH