Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1780 ATGGGGATGGATTCTTCTAGTGGGCAACAACAGCAAATGTCTAACCAGTCATTGGAGAGCATGTTAACATGTTCAAAAGGAGAACAAGACAAAAAGCCAAAACCTCCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAACAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCACAACCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACTAAAGGTGGTACACTAAGGAATGTTCCTGTTGGTGGGGGGTGTCGAAAGAACAAAAGATCATCATCAGCATCATCAAAGAGATCTCAAGATCAACCATTTCAAACCAACCCAAATCCACTCACTTGTTTCCCTTCATTGTCCTATGATTCCAATGATCTCACACTAGCATTAGCTAGGCTTCAAAAGGGTCATCTTGGATTTGATCATGAACATGATTTTTCCATTTTAGGAAACCAAACCAACACCTCATGTGGCATTCTTAACAATCATGGTATGAACCATTCCTCAAACAACCAAGGATTCTTTGAAGCACTTATGGGATCTCAGAACAATGTGCAAAATCTTTACTACATGGGAGAGGTTGATAATGGCAATGCTAATGGCAATGGTAATGGTGAAATGATGTTACCTTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTTACAGTTACTACTATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATGGTGACACAAACATGGCTGAAATGGATCATTTAGGAAGAGCTGGTTGGAATGGTCTCACTTCATCTTGGGGGCATGGCCTTCTCAATAGCCCCCTAATGTAG 870 0.392 MGMDSSSGQQQQMSNQSLESMLTCSKGEQDKKPKPPQPEALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSASSKRSQDQPFQTNPNPLTCFPSLSYDSNDLTLALARLQKGHLGFDHEHDFSILGNQTNTSCGILNNHGMNHSSNNQGFFEALMGSQNNVQNLYYMGEVDNGNANGNGNGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNGDTNMAEMDHLGRAGWNGLTSSWGHGLLNSPLM* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1780 289 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g1780 289 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Mtr4g1780 289 MobiDBLite consensus disorder prediction 86 114 - -
Mtr4g1780 289 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 9 288 - -
Mtr4g1780 289 MobiDBLite consensus disorder prediction 1 42 - -
Mtr4g1780 289 MobiDBLite consensus disorder prediction 100 114 - -
Mtr4g1780 289 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Mtr4g1780 289 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Mtr4g1780 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 288 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1780 Mtr-Chr4 30692329 30694081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1780 10 289 C2C2-Dof Transcription Factor Family AT2G28510 42.038 8.65e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr4g1780 zf-Dof 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1780 - - gmx:100799737 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1780 4 30692329 30694081 Mtr4g1780 4 30692329 30694081 ECH
Mtr2g3201 2 45846895 45849231 Mtr4g1780 4 30692329 30694081 PCT