Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4232 ATGGCTGGGTTATTTTGTCTAGGTAGAAAGGAAGGTCAAAAAGAAGATAAATTAGATTATTATAGTAATAAAGAATTATTGTTAAGAAACGAGGAGATCTATAACAACAAAGGGTTAGAGATATGGCCACAACAAAGCTTGAACATTTACAATGCGTTTGGAGTGGGTCATAGTAGTAGTAGTAGTAGTAGAAATTCTTCGTTTGATGAGTGTGAAAGAAGATTTGGTATTATGAGGCGTAGTGGAGGAATGAATTGTCAGGACTGTGGTAACCAAGCAAAGAAAGATTGTATACATCTAAGATGCAGAACTTGTTGTAAAAGTCGAGGGTTTCAGTGTCAAACACATGTTAAGAGTACTTGGGTTCCCGCTGCTAAACGCCGTGAACGACAACAACATCTCTCTGCGTTACCGTTTCGTCGTAGAGATCATGTAGACAATTACAAACGACACACAGAAATTAATCAAGGTGCAACCTCTCTTCCTTTCCCTCAACCACCCATCCCTACCACAGGGTTGGAGTTGGGACAATTCCCACCAGAGGTGAGTTCTCCAGGAGTAACGTTTAGGTGTGTAAGGGTGAGTTCATTGGACGGTCCAGATCATGAGCAATGCGCGTATCAAACGGCTGTGAACATAGGAGGGCATGTTTTCAAAGGAATTCTCTATGATCAAGGTCCTCCAAATCTTTACACCAGTATTGCACCTATTGAAGGTTCTTCTGGTGGAGGTCATCATCAACCTCAACAACTTGATTTCATGGCTGCAACAGCAACTACAGCTACAACCAGCGGTATCCATTTCGACCCTTCACTTTACTCAGCTCCGCTTAATGCTTTCATGGCAGCTGGTACACAATTTTTCCAACCCCAACATCCTAATTAA 885 0.4181 MAGLFCLGRKEGQKEDKLDYYSNKELLLRNEEIYNNKGLEIWPQQSLNIYNAFGVGHSSSSSSRNSSFDECERRFGIMRRSGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHLSALPFRRRDHVDNYKRHTEINQGATSLPFPQPPIPTTGLELGQFPPEVSSPGVTFRCVRVSSLDGPDHEQCAYQTAVNIGGHVFKGILYDQGPPNLYTSIAPIEGSSGGGHHQPQQLDFMAATATTATTSGIHFDPSLYSAPLNAFMAAGTQFFQPQHPN* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4232 294 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 290 IPR007818 GO:0003700|GO:0006355
Mtr3g4232 294 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 177 227 IPR006511 -
Mtr3g4232 294 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 85 127 IPR006510 -
Mtr3g4232 294 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 290 - -
Mtr3g4232 294 Pfam Domain of unknown function (DUF702) 83 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4232 Mtr-Chr3 56187417 56189548 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mtr3g4232 DUF702 6.8e-58 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4232 3 56187417 56189548 Mtr4g2143 4 34928039 34929383 ECH
Mtr3g4232 3 56187417 56189548 Mtr3g4232 3 56187417 56189548 ECH
Mtr1g0667 1 7487997 7489816 Mtr3g4232 3 56187417 56189548 PCT