Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4225 ATGAAATCGGGAATGGAAGTTGAGGAGAGAAAAAAGTTGAAGAAACCCCAACAGGCCATTTCCAGAAAAGGTTGCATGAAAGGTAAGGGAGGACCTGAAAATCCGAGTTGCCCTTACAAGGGTGTGAGACAGAGAACTTGGGGTAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTTCTCGCCTTTGGCTTGGGACATTTGAGACATCCCTTGAAGCTGCTTTGGCTTATGATGCTGCCGCACTTAAGCTTTATGGATCAAGGGCCAAGCTCAATCTACCTGAAATCTCTACATCTGTTAAATCTGAGGGTCAACAATCTTCCCCTGACACTCAAATTGTTCAAATGGAAGACCCATACCATCCTCAAGGTAATCACAACACAGGTAATAACACATGTTTAGGTTTCAATACCAACCCATACCCAACAGTGTCAATGGCTTATCAACCATTAAACAACAACAACAACAACTCCACTCTTTCTTTTCCATTCGATACCAACTCTAATCCAATTGATCAAACTTATAAGGATTTCTTTCCACCTTTAGATGATTCCATATGGCCAGAAGATGCCATGTCAATAGATTTTCCAATTAATTATGCAAGTTCGAGAATGATCACAGAGGAAAATTTGGCAGACGGAAGTGTTTGGGATTCGTTGCAGACACCATGGTGCATGTAA 684 0.4196 MKSGMEVEERKKLKKPQQAISRKGCMKGKGGPENPSCPYKGVRQRTWGKWVAEIREPNRGSRLWLGTFETSLEAALAYDAAALKLYGSRAKLNLPEISTSVKSEGQQSSPDTQIVQMEDPYHPQGNHNTGNNTCLGFNTNPYPTVSMAYQPLNNNNNNSTLSFPFDTNSNPIDQTYKDFFPPLDDSIWPEDAMSIDFPINYASSRMITEENLADGSVWDSLQTPWCM* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4225 227 MobiDBLite consensus disorder prediction 1 40 - -
Mtr3g4225 227 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Mtr3g4225 227 MobiDBLite consensus disorder prediction 1 15 - -
Mtr3g4225 227 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Mtr3g4225 227 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Mtr3g4225 227 CDD AP2 39 96 IPR001471 GO:0003700|GO:0006355
Mtr3g4225 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 210 - -
Mtr3g4225 227 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Mtr3g4225 227 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Mtr3g4225 227 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Mtr3g4225 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 12 210 - -
Mtr3g4225 227 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4225 Mtr-Chr3 56111500 56112477 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr3g4225 AP2 9.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4225 3 56111500 56112477 Mtr3g4225 3 56111500 56112477 ECH
Mtr1g0663 1 7434732 7436115 Mtr3g4225 3 56111500 56112477 PCT