Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4216 ATGTATCCCAACCAAGCATTCTCTTCAGGGTCCTATATGGATATGTTCACCTCGAGTCCTTTGTTACCTTACAATTACTACAATGAATCTGTAGCAGAACAAAATGGAATCAAGTTTAACATGCCTATAGGCGACACAGTGACTATGCAATCCATTGATGAGCATTCCAATGCTTACAACTCTCATGTAGATGAGCAAAGTATACAATGCCAAGAGTTATCTCTTAGGCTCGGGACACTACTGCCTTCCAATGCATCTGTCCCTCCATTTCAATACCAGTATAATGACACCGGTTTTGTATCACTGATGAATGCTTGTCGTCTTCCAAAGGGAACTACTATAGCGAATGAAGATGAATTGAAAAGTTCCGAATGCATGGAAAGCATTTCTTCCAGAGGATTTCATGACACTATCAAAAGGGACTGTTTTCGCAACCCTCACTCCTCAGATCAATGCCTTCCGGGCTCACAAGGTTTTTCTAACATTTTCCTAAACACTCAATATCTTAAGGCTATACAGGAGTTACTTGATGAGATAGTTAATGTCCGAAAGCAACGTGGAATGGAAAAGCAAGAAACAATCCGCAACATTGGATTGGATAATCCCAAAGATAGTGATGGAAAATCTATTAGTCAGTCTATGCAAATAACTTCAGGGGGACCTAATGATCCTAATTCCAATCCTTCTTGTGAAATATCCTCAGCCGAAAGACAGAATTTGTTGGATAAGAAGACAAAGCTTTTGTCCATGTTGGATGAGGTAGACAAGAGATACAGACAGTACTGCCATCGGATGCAAATTGTGGTGTCATCTTTGGACATGGTTGCTGGGGGTGGAGCAGCAGAGCCATATACTACACTTGCATTGCGAACAATTTCGCGTCAGTTTCGCTGCTTGCGCGATGCTATCAGCAACCAAGTTCAAGTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATACCTCGTCTCCGGTACGTGGACCAACAGCTTAGGCAACAAAAGGCACTTCAGCATCTTGGTGTTATGCGACAAGCTTGGAGACCTCAGAGAGGACTTCCCGAAAACTCTGTTTCAATACTTCGTGCTTGGCTCTTTGAACATTTTCTTAATCCTTACCCCAAGGATTCAGAGAAAATAATGCTAGCTAGGCAAACTGGTTTGACAAGGAATCAGGTGGCAAATTGGTTCATTAATGCACGTGTGCGTCTTTGGAAACCAATGGTTGAAGAAATATACAAAGAAGAGTTCGGTGGTTCTGAAATGAACTGCAATTTTTCATCTGGAAATACACTCCAAGAGTTGGGTAACTTTACAACTGTGGAGAGTGGTGGCCACAACAATGTCTCTCTTGCATTGGAGTTGAGAAACTGTGAAAGCGATGGATTAGCCACATCTGATGACGATGCCATTCATAAAAGACATAATAATAATAATAATCAGACATTGGTTTCTTCTTCACAGAGTACTGATTTACTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACATGTTTGGCAATACTCATCTGTTGCATGAATTTGTCGTATGA 1554 0.4118 MYPNQAFSSGSYMDMFTSSPLLPYNYYNESVAEQNGIKFNMPIGDTVTMQSIDEHSNAYNSHVDEQSIQCQELSLRLGTLLPSNASVPPFQYQYNDTGFVSLMNACRLPKGTTIANEDELKSSECMESISSRGFHDTIKRDCFRNPHSSDQCLPGSQGFSNIFLNTQYLKAIQELLDEIVNVRKQRGMEKQETIRNIGLDNPKDSDGKSISQSMQITSGGPNDPNSNPSCEISSAERQNLLDKKTKLLSMLDEVDKRYRQYCHRMQIVVSSLDMVAGGGAAEPYTTLALRTISRQFRCLRDAISNQVQVIQRNLGEQEGIPRLRYVDQQLRQQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGGSEMNCNFSSGNTLQELGNFTTVESGGHNNVSLALELRNCESDGLATSDDDAIHKRHNNNNNQTLVSSSQSTDLLDYHFTDSGKQQHMFGNTHLLHEFVV* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4216 517 Coils Coil 165 192 - -
Mtr3g4216 517 Gene3D - 343 420 - -
Mtr3g4216 517 ProSiteProfiles 'Homeobox' domain profile. 343 406 IPR001356 GO:0003677
Mtr3g4216 517 CDD homeodomain 346 407 IPR001356 GO:0003677
Mtr3g4216 517 Pfam Homeobox KN domain 363 402 IPR008422 GO:0003677|GO:0006355
Mtr3g4216 517 Pfam Associated with HOX 164 304 IPR006563 -
Mtr3g4216 517 SUPERFAMILY Homeodomain-like 347 413 IPR009057 -
Mtr3g4216 517 MobiDBLite consensus disorder prediction 205 232 - -
Mtr3g4216 517 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 26 489 - -
Mtr3g4216 517 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 489 - -
Mtr3g4216 517 SMART HOX_1 346 410 IPR001356 GO:0003677
Mtr3g4216 517 MobiDBLite consensus disorder prediction 193 232 - -
Mtr3g4216 517 SMART prehox3 157 305 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4216 Mtr-Chr3 56010288 56014047 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr3g4216 POX 1.3e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4216 3 56010288 56014047 Mtr3g4216 3 56010288 56014047 ECH
Mtr3g4216 3 56010288 56014047 Mtr1g0658 1 7371073 7375290 PCT