Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4215 ATGATGTCAAACTCCATGACCCATCAAAATCAATTTGAGAACCAAGAACTACTAGGTGGTGGTTATGTTTCATCTTCTTTGAGAAACAACAATGCATATCATGAATCACTTGGAACATTTTCTAACAATATTGGGCTAGCACAAGGTTCTGAGATGAGTCACACAAGACATTTGATGGATCTACTTGGTGCAGCAAACGAGAATAATCACCAGACACAACAAGGCCTATCCCTTTCTTTAGGCTCTCACATGCTTGTTGATGAATACAGAAACCGTTCCTTAAATCAAGGTCTTATGATCAATCCAAGTTACTTCATGCCTGGTCAAGATCAGACACGTGAGCCTTGTAATCAACCTGTGGTGGAGAATCTAACTAGTGATTATTTTTTCAGTGGTGGAAGTGGAACTTTTGCTTCAGGTTCTAATAATAATAACTCATTATTATTGAACCGTTCTACTTCTACTTCTTATGGAAGTGAGAGTTTTGGTTCTGTTATTGGGAACTCTAGATACCTTAAACCAGTACAGTCACTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAATATGCTGAGAAGTTGTTTCATGGGAGTAGAACAGGTGCTAGAACACTCTCCTCTGAGCTCAAAGCAGAGTTGAGGATTCATGGACATTTATTGGCTGACAAACATGAACATCAAGTCAAAATTGCAAAGCTCATTTCATTGTTGGATGAGGTTGAGGGTAGATATGAGAAGTACTACCATCAAATGGAAGAAGTAGTATCATCTTTTGAAATGATAGCAGGTTTGGGAGCTGCAAAGTGTTACACTGCTCTGGCACTTCAAGCAATGTCTAGGCATTTTTGTAGCTTAAGAGATGCCATAATGTCCCAAATAAATGCTGAGAAAAGAAAACTGTTTCAGGATGTACCTAAAATTAATAGTGGATTGTCTCAACTGAGCTTATTTGAGAGAGATAATAATAGACAGACTAGAATGTCTCTCCAACAACTTGGAGTCATTCAAAACCAACGACAAGTTTGGAGACCTATTAGAGGGTTACCTGAAACATCTGTAGCAATTCTTCGTGCTTGGCTCTTTGAGCACTTTCTTCATCCCTATCCTAATGATTCTGAGAAGTTAATCCTGGCTTCCCAAACAGGTTTAACCAAAAACCAAGTGTCAAACTGGTTCATTAATGCAAGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCTTCGGAAGACTCCAACCCGCCAGCTAACAATTTTATGTCAAGGGAAGATAGCACTGTGGAGGATTAG 1332 0.3874 MMSNSMTHQNQFENQELLGGGYVSSSLRNNNAYHESLGTFSNNIGLAQGSEMSHTRHLMDLLGAANENNHQTQQGLSLSLGSHMLVDEYRNRSLNQGLMINPSYFMPGQDQTREPCNQPVVENLTSDYFFSGGSGTFASGSNNNNSLLLNRSTSTSYGSESFGSVIGNSRYLKPVQSLLEDLVDVGGNVIDRMNEKYAEKLFHGSRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKLISLLDEVEGRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINAEKRKLFQDVPKINSGLSQLSLFERDNNRQTRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLILASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPPANNFMSREDSTVED* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4215 443 ProSiteProfiles 'Homeobox' domain profile. 368 409 IPR001356 GO:0003677
Mtr3g4215 443 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Mtr3g4215 443 SUPERFAMILY Homeodomain-like 355 417 IPR009057 -
Mtr3g4215 443 SMART HOX_1 349 413 IPR001356 GO:0003677
Mtr3g4215 443 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 15 427 - -
Mtr3g4215 443 CDD homeodomain 349 410 IPR001356 GO:0003677
Mtr3g4215 443 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 427 - -
Mtr3g4215 443 SMART prehox3 160 298 IPR006563 -
Mtr3g4215 443 Gene3D - 345 424 - -
Mtr3g4215 443 MobiDBLite consensus disorder prediction 418 443 - -
Mtr3g4215 443 Pfam Associated with HOX 165 297 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4215 Mtr-Chr3 56002648 56005718 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr3g4215 POX 1.4e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4215 3 56002648 56005718 Mtr3g4215 3 56002648 56005718 ECH
Mtr1g0658 1 7371073 7375290 Mtr3g4215 3 56002648 56005718 PCT