Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4186 ATGGCTTCAAGTTCGAATTGGACAACAAAGCAGAACAAAAGATTTGAGAATGCGTTGGCAATGTTGGACAAGGACACTCCTGATCTTTGGCAGAAGGTGGCTAGAGCTGTGGGAGGGAAGACTGTTGAAGAAGTGAAAAGGCATTATGAGGACCTTGTTGAAGATGTTAGGCAGATCGAGGAAGGCCATGTTCCCCTGCCTAATTACACAAATAATGTTGGTTACAGTTACATAATGGATCAAGATAAAAGGATGAAGGCTCTAAGTCTCCACTAA 276 0.4275 MASSSNWTTKQNKRFENALAMLDKDTPDLWQKVARAVGGKTVEEVKRHYEDLVEDVRQIEEGHVPLPNYTNNVGYSYIMDQDKRMKALSLH* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4186 91 Gene3D - 1 66 - -
Mtr3g4186 91 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Mtr3g4186 91 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Mtr3g4186 91 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Mtr3g4186 91 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Mtr3g4186 91 CDD SANT 6 53 IPR001005 -
Mtr3g4186 91 Coils Coil 42 62 - -
Mtr3g4186 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 91 - -
Mtr3g4186 91 SMART sant 3 55 IPR001005 -
Mtr3g4186 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 91 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4186 Mtr-Chr3 55779071 55780028 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g4186 Myb_DNA-binding 8.9e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4186 3 55779071 55780028 Mtr3g4186 3 55779071 55780028 ECH
Mtr1g0620 1 7093775 7094948 Mtr3g4186 3 55779071 55780028 PCT