Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4165 ATGGCGAAATCTAGCGCCGACGATGCCGAACTCCGGCGAGCTTGTGAAGCTGCAATTGAGGGCACCAAACAGAAGATCGTCATTTCCATCCGAGTTGTCAAGACTCACGGTACCTGGGGAAAAGCTGCTAAGCTTGGTCGTCAAATGGCCAAACCTAGGGTTCTCGCTATTTCTACAAAAGCGAAAACTCAACGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCGAATGGAGGAGTTCTTGAGCCTGCTAAGATATACAAGCTGAAGCATCTCTCAAAAGTGGAAGTTGTAACAAATGATCCCAGTGGATGTACGTTTACGTTGGGATTTGATAACCTCAGAAATCACACTGTGGCTCCTCCACAGTGGACAATGCGCAATATTGACGACAGGAACCGCCTCCTGCTTTCTACCTTGAATATCTGCAAAGATGTCCTGGGTCGCCTTCCTAAGGTTGTTGGTATTGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCTGCAGTTTCCACTCAAAATAACCAAACAGATGGTGCTACTGTTGAATCTGCTGTCAATGAAGCAGAATTGAAAGTCAATGTTGAAAAGGAGCTTGTCTCCCAAGCAGAGGAAGAGGACATGGAAGCTCTTTTGGGAAATTATATCACGGGTATTAGTCAAGCAGAGGCGTTTTCTGAAAGGTTGAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCTATTTTAGAAAGTGAACCTCTGATAGATGAGGTTTTGCAAGGACTTGAAGCTGCTTCAAATTGTGTCGAAGATATGGGTGAATGGTTAGGCATGTTCAATGTGAAACTCCGACACATGAGGGAGGATATTGAATCAATTGAAATCCGCAATAACAAGTTGGAAATGCAATCAGTAAATAACAAATCTCTCATTGAAGAGCTTGATAAACTTATTGAGCAATTGAATATCCCTTCTGAGTATTCAGCATTTTTGACAGGAGATTCGTTTGATGAAGTGCAAATGCTTCAAAATATAGAAGCATGTGAATGGTTGACCGGTGCCTTGCGTAATTTTGAAGCGTCTAACATAGATCCTACTTATGTAAAGATGAGAGCTTTCAAAGAGAAGCGAGGAGAACTTCAAATAATAAAATCTACTTTTGTCAGGAGAGTTTCTGAATTTTTGAGGAATTACTTTGCTACTTTTGTTGATTTCATGATGAATGATAAAAATTACTTTTCTCAGCGAGGACAGTTGAAAAGGCCAGATCATGCTGACCTTCGATACAAGTGCAGGACATATGCACGCCTTTTGCAACAGTTAAAGATTCTCGATAAGAATTGCTTGGGCCCATTGAAAAAAGCTTATTGTTGTTCTCTAAACTTGCTTCTTCGCAGGGAGGCTCGTGAATTTGCTAATGAACTTCGTGCTAGTACTAAAATTTCTAAAAATCCAAATGTTTCGCCTGAAGGTTCCGTGGGCTCTAGTCAGAATGTAAATTCTGCCGACTCTTCTGCAATTTCTGATGCATATGCAAAGATGCTCACTGTTTTTATCCCACTAATGGTGGATGAGAGTTCTTTTTTTGCACACTTCATGTGCTTCGAAGTTCCTATGCTTGATGTTAATAAATCCGGACACAACGATGATGATGATTTGGGAATTGCAGACATCGATGAGAATGATAGTAATAGTAAATCCGGTATAAGTTCTGCGGAGCTTGCAGCTTTAAATGAATCACTTCAGGATTTGCTAGATGGAATTCAAGAAGACTTCTATGCTGTTGTAGATTGGGCATGTAAGATTGATCCTTTATGCTGCATATCAATGCATGGAATAACAGAACGCTATCTTTCTGGTCAAAAAGCTGATGCAGCAAGATTTGTCCGCCTTTTGCTTGGTGAACTCGAGTCTCGGATATCTATGCTATTCATCCGTTTTGTTGATGAGGCTTGCCATAATATTGAAAGAAGTGAGCGTAATGTTCGCCAAAGTGTCTTACCCTACATTCCCAGATTTGCAACCCTTGCAACAAAGATGGAGCAGTACATTGCTGGACAGTCCAGGGATTTGGTTGACCAAGCATACATGAAATTTGTAAGCATAATGTTTGTAACTTTGGAAAAACTTGCACAAGTAGAGCCAAAGTACGCAGATATTTTCCTTATAGAGAACTATGCTGCTTTTCAGAATAGTTTGTATGACCTAGCCAACGTGGTGCCTACTTTAGCCAAGTTTTATCATCAAGCTAGTGAAGCATATGAGCAATCGTGCTCACGCCATATTAGCATGATTATCTATTATCAATTTGAACGCCTTTTCCAGTATGCTCGGAGGATTGAGGACTTGATTTTAAATAATGTTTCACCTGAAGAGATTCCTTTCCAGCTTGGGCTGTCAAAAGTGGATTTTCGGAAAATGCTAAAAGCCAGTTTGTGTGGGATGGACAAGTCCATAAATGCAATGTATAAGAAATTGCAGAAGAATTTGACTTCAGAAGAACTGTTACCTTCCTTGTGGGATAAATGCAAGAAAGATTTTGTGGATAAGTATGACAGTTTTGTCCAACTCGTCGCCAAGATTTACCCTGCTGAGTCAGTCCCTTCTACAGCAGAATTGAGAGAGCTTTTAGCTAAAATGTAA 2637 0.4054 MAKSSADDAELRRACEAAIEGTKQKIVISIRVVKTHGTWGKAAKLGRQMAKPRVLAISTKAKTQRTKAFLRVLKYSNGGVLEPAKIYKLKHLSKVEVVTNDPSGCTFTLGFDNLRNHTVAPPQWTMRNIDDRNRLLLSTLNICKDVLGRLPKVVGIDVVEMALWAKENTPAVSTQNNQTDGATVESAVNEAELKVNVEKELVSQAEEEDMEALLGNYITGISQAEAFSERLKRELQALEAANVHAILESEPLIDEVLQGLEAASNCVEDMGEWLGMFNVKLRHMREDIESIEIRNNKLEMQSVNNKSLIEELDKLIEQLNIPSEYSAFLTGDSFDEVQMLQNIEACEWLTGALRNFEASNIDPTYVKMRAFKEKRGELQIIKSTFVRRVSEFLRNYFATFVDFMMNDKNYFSQRGQLKRPDHADLRYKCRTYARLLQQLKILDKNCLGPLKKAYCCSLNLLLRREAREFANELRASTKISKNPNVSPEGSVGSSQNVNSADSSAISDAYAKMLTVFIPLMVDESSFFAHFMCFEVPMLDVNKSGHNDDDDLGIADIDENDSNSKSGISSAELAALNESLQDLLDGIQEDFYAVVDWACKIDPLCCISMHGITERYLSGQKADAARFVRLLLGELESRISMLFIRFVDEACHNIERSERNVRQSVLPYIPRFATLATKMEQYIAGQSRDLVDQAYMKFVSIMFVTLEKLAQVEPKYADIFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQSCSRHISMIIYYQFERLFQYARRIEDLILNNVSPEEIPFQLGLSKVDFRKMLKASLCGMDKSINAMYKKLQKNLTSEELLPSLWDKCKKDFVDKYDSFVQLVAKIYPAESVPSTAELRELLAKM* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4165 878 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Mtr3g4165 878 Coils Coil 188 208 - -
Mtr3g4165 878 Coils Coil 221 248 - -
Mtr3g4165 878 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Mtr3g4165 878 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 878 - -
Mtr3g4165 878 Coils Coil 281 318 - -
Mtr3g4165 878 Pfam Exocyst complex component Sec3 224 861 IPR019160 GO:0000145|GO:0006887
Mtr3g4165 878 PANTHER SEC3/SYNTAXIN-RELATED 1 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4165 Mtr-Chr3 55550753 55568056 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4165 3 55550753 55568056 Mtr3g4165 3 55550753 55568056 ECH
Mtr1g0571 1 6600627 6615051 Mtr3g4165 3 55550753 55568056 PCT