Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3625 ATGCAATCAACTAACGGTTCTGATTCGAAACCAACGGAACAGAGTAGTAACAACAGGCCGCAACAGAAAACTCCGCCGCCACCTTCACCGCATTCACTTACATTTCCACCACCGCAGCAGTGGGTTCCGATGCAATATCCACCGGCGGCAATGGTAATGCCGCATCATATGTTACCGCCTCAACATTATCCGCCGCCACCGCACCATTACATGGCTTATCATCATTATCTTCACCACGTGCCTCACGTGCATCATGGATCTAGTGCTGCTGATAATAAAACTCTCTGGGTCGGTGATTTGCACCATTGGATGGATGAAAATTATCTCCACCGTTGTTTCGCTTCCACCGGCGAGATTTTCTCCATTAAGGTTATTCGCAATAAGCAGACTTGTCAAACAGAGGGGTATGGATTTGTGGAATTCACTTCACATGGGACAGCTGAGAAAGTCTTGCAGACTTATGCTGGGATGTTGATGCCTAACACAGAGCAACCTTTTCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGTTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATACCATGTTACTTGAAACTTTTTCTGATAAATACCCTTCAGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGACGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATGGTGAAAGGTCTAAAGCTTTGAATGAAATGAATGGTGTTTTCTGTTCTAGCAGGGCAATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAACGGCACACCCAGCCAATCTGACACTGATTCTACAAATACAACTATATTTGTTGGAGGACTTGACCCTAGTGCTACCGCTGAAGATCTTAGACAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAAGCATTGCAGAAGCTAAATGGTACAACAGTTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGTTTAGATCTGAATTCGGCAGTCCCTGGAATGGGCCAGCATATTATGGGGGACCTGCTTATGATGGTTATGGATATGCTATGCCGCATCCTTATGACCAGAGCATGTATGCTGCTGCTTATCCCATGTATGGAGGACACCAACAACAAGTAAGCTAA 1263 0.4466 MQSTNGSDSKPTEQSSNNRPQQKTPPPPSPHSLTFPPPQQWVPMQYPPAAMVMPHHMLPPQHYPPPPHHYMAYHHYLHHVPHVHHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFRSEFGSPWNGPAYYGGPAYDGYGYAMPHPYDQSMYAAAYPMYGGHQQQVS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3625 420 MobiDBLite consensus disorder prediction 1 40 - -
Mtr3g3625 420 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g3625 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 173 IPR000504 GO:0003723
Mtr3g3625 420 MobiDBLite consensus disorder prediction 21 40 - -
Mtr3g3625 420 SMART rrm1_1 293 360 IPR000504 GO:0003723
Mtr3g3625 420 SMART rrm1_1 94 169 IPR000504 GO:0003723
Mtr3g3625 420 SMART rrm1_1 188 262 IPR000504 GO:0003723
Mtr3g3625 420 MobiDBLite consensus disorder prediction 264 296 - -
Mtr3g3625 420 Gene3D - 281 395 IPR012677 -
Mtr3g3625 420 MobiDBLite consensus disorder prediction 267 296 - -
Mtr3g3625 420 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 33 419 - -
Mtr3g3625 420 SUPERFAMILY RNA-binding domain, RBD 186 365 IPR035979 GO:0003676
Mtr3g3625 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 419 - -
Mtr3g3625 420 SUPERFAMILY RNA-binding domain, RBD 52 175 IPR035979 GO:0003676
Mtr3g3625 420 Gene3D - 174 280 IPR012677 -
Mtr3g3625 420 CDD RRM3_NGR1_NAM8_like 291 362 - -
Mtr3g3625 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Mtr3g3625 420 CDD RRM1_SECp43_like 94 174 - -
Mtr3g3625 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 364 IPR000504 GO:0003723
Mtr3g3625 420 Gene3D - 92 172 IPR012677 -
Mtr3g3625 420 CDD RRM2_SECp43_like 186 265 - -
Mtr3g3625 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Mtr3g3625 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Mtr3g3625 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 357 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3625 Mtr-Chr3 50111369 50115213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3625 76 371 Eukaryotic Initiation Factors Gene Family AT4G34110 28.289 7.27e-29 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3625 3 50111369 50115213 Mtr3g3625 3 50111369 50115213 ECH
Mtr1g0534 1 6228862 6233357 Mtr3g3625 3 50111369 50115213 PCT