Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3141 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGATTGGTTAAACAAATGGATGGATCAACTTCAAATTCAAAACCAACTCCTTCTATGTTAGAGAGAAAAGCAAGGCCACAAAAAGATCAAGCTTTAAACTGTCCAAGGTGCAATTCAACTAACACAAAATTCTGTTACTACAATAACTATAGCCTCTCACAACCAAGGTACTTTTGCAAAACCTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTAAGAAATGTTCCTGTAGGTGGTGGTTCAAGAAAAAACAAAAGATCAACCTCATCATCATCACCTTCAATCTCACAATCACAACCTCCATCATCAATAACAAAAAATATTATCATTAATCCTGATCTTGCTACAACACAAAATAATTTCCCTCAATCTGCTTCTCAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACAAACAACTGAGGATAATTATAACACCATATCTAAATTCATTGAGCTTCCTTACACAACTGATCATCAAGACAAAACTACAAGTGCTATGGAGCTTCTGAAAACTGCTTCTTCATCAAGGGGTTTGAATTCTTTTATGCCTATGACTTTGTCTGAGTCTAGTGCAATGTATAATTCAAGTGGCTTTGCTTTGCAAGATTTTAAGCTTGGGGTCAATTTTGGCTTAGAAGGGTTTGAGAATGGTTATGGTGGTTTACAAGGGATTAATAATCAAGAGGGTTCTGCTGGTGGTGGTGGTGGTGGTGGTGCAAGGATGTTGTTTCCTGTTGTAGAGGATCAGTTGAATAAGCAACAGCAGCAACAAGTTCCAAATAGTGGTGAGTTTGAACATCAGCAAAATAGAACTCAAGGTGATTCTACTGGTTATTGGAACGGAATGTTAGGTGGAGGATCATGGTAG 921 0.3844 MDTAQWAQGNIGLVKQMDGSTSNSKPTPSMLERKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSSPSISQSQPPSSITKNIIINPDLATTQNNFPQSASQNPKIHQGQDLNLAYPPQTTEDNYNTISKFIELPYTTDHQDKTTSAMELLKTASSSRGLNSFMPMTLSESSAMYNSSGFALQDFKLGVNFGLEGFENGYGGLQGINNQEGSAGGGGGGGARMLFPVVEDQLNKQQQQQVPNSGEFEHQQNRTQGDSTGYWNGMLGGGSW* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3141 306 MobiDBLite consensus disorder prediction 84 148 - -
Mtr3g3141 306 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Mtr3g3141 306 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Mtr3g3141 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 303 IPR045174 GO:0003700|GO:0006355
Mtr3g3141 306 MobiDBLite consensus disorder prediction 1 43 - -
Mtr3g3141 306 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 303 - -
Mtr3g3141 306 MobiDBLite consensus disorder prediction 268 296 - -
Mtr3g3141 306 MobiDBLite consensus disorder prediction 268 306 - -
Mtr3g3141 306 Pfam Dof domain, zinc finger 40 97 IPR003851 GO:0003677|GO:0006355
Mtr3g3141 306 MobiDBLite consensus disorder prediction 92 148 - -
Mtr3g3141 306 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3141 Mtr-Chr3 45355090 45356900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3141 29 306 C2C2-Dof Transcription Factor Family AT3G61850 41.414 8.12e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr3g3141 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3141 - - cam:101493540 360.147