Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3070 ATGTTCCAACAAAGACATAACAATATTAGTAGTAGCGAGCTAGATCAAATGTTACATATGTTATCTTCTCCTAATTCTAATATCATGCCATTCCCAACAACCTCAATGGACAAATCAAATTCAAAGTGGAAACCACACATTGAAATAGCTCCTAATTGTCCTCGTTGCGCTTCATCAAACACCAAATTCTGTTACTACAACAATTACAGCTTGTCCCAGCCACGGTATTTTTGCAAAGGTTGTAGACGTTATTGGACCAAAGGTGGCTCTCTTCGGAATGTTCCTGTTGGTGGTGGCTGCCGCAAAAACCGTCGTGGAAAGGCGGTCAGAAATTCTCAGACTGACCGTCTTTCCGCGAATTATGGCTCTGCTGACGATGAAGATCATCAGCAAAACCAAAACAATGGTTCCCGCGATATAGATATGGCTGTTGTTTTCGCCAAATTCTTAAACCAAAATCCAAATAGTACTCATCATGGTGATGAGGAATTGGAAATTGAGAGTGAGGTTAATAATAATGGACTGTCTTCTTCTTCCAACAATATTAACAATTTGTCATCGACACCGGAAAGCGTTGAAACGGAGAATGATGCAGTGGTCCAGCCTCATAAACCTTTTGATGAGGTTCAGAATTATGGAGGTGAACATGAGTTGAGTTTGAGTGGGATTGAATATGATCAGTTTGAAGGGTTTCTAGGTGTTGATGAAGATGTGGTACAAGATGTTCTATGGCCTGATTCTAATGCTATGAATATGATGATGTCATCTTCTTCCAATAATTATACATGGCAACAACCACCACCAATGATGCAAATGGAGTTACCAGGAGAGTTGGAATTGGAATACTCAATGCCATTGCCATTGCCCTTGAATAATGAGAATGGTACTATTAATTCCAATTCTACTACTAGTGTCAATTTAATAAGTGAAAGTTGGAATTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTCTTCTCTTCAAGTTCAAGACCTTAA 999 0.3904 MFQQRHNNISSSELDQMLHMLSSPNSNIMPFPTTSMDKSNSKWKPHIEIAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKAVRNSQTDRLSANYGSADDEDHQQNQNNGSRDIDMAVVFAKFLNQNPNSTHHGDEELEIESEVNNNGLSSSSNNINNLSSTPESVETENDAVVQPHKPFDEVQNYGGEHELSLSGIEYDQFEGFLGVDEDVVQDVLWPDSNAMNMMMSSSSNNYTWQQPPPMMQMELPGELELEYSMPLPLPLNNENGTINSNSTTSVNLISESWNSWDSFDLSTMEVFSSSSRP* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3070 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 33 267 - -
Mtr3g3070 332 MobiDBLite consensus disorder prediction 172 191 - -
Mtr3g3070 332 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Mtr3g3070 332 MobiDBLite consensus disorder prediction 96 135 - -
Mtr3g3070 332 Pfam Dof domain, zinc finger 51 105 IPR003851 GO:0003677|GO:0006355
Mtr3g3070 332 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Mtr3g3070 332 MobiDBLite consensus disorder prediction 112 135 - -
Mtr3g3070 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 267 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3070 Mtr-Chr3 44539960 44541343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3070 43 155 C2C2-Dof Transcription Factor Family AT3G52440 61.864 8.39e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr3g3070 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3070 - - mtr:MTR_3g090430 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3070 3 44539960 44541343 Mtr3g3070 3 44539960 44541343 ECH