Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2242 ATGCAGAACAAAAACATTCTATTATTGTTCCTCCTCTTCAAACTCTTAATAACAACAACCTCAAAATCAACAATAGAACCATGCACAACCTCCGACACATGCAACTCTCTCCTAGGTTACACTCTCTACACAGACCTCAAAGTCTCCGAACTCTCTTCCCTCTTCCAAATCGACCCAATCTCACTCCTCACTGCAAACTCCATAGACATTTCTTACCCTGACGTTGAACACCACATCCTTCCTTCAAAACTCTACCTCAAAATCCCAATCCAATGCTCTTGCATAGACGGAATCCGAAAATCCGTTTCAACCAACTACAAAATCCGTCCTTCTGACACTCTTTCATCTATTGCTGATTCCATTTACGGTGGTTTGGTTTCTTCTGATCAGCTTAGAGAAGCTAACTCTGTTACGGATCCGAATGTTCTTGATGTTGGTCAGAACCTTGTTGTTCCTCTTCCTTGTACTTGTTTTAATGGTTCTGATAATGGGTTGCCCGCGATTTACATGTCTTATGTTGTTCAGCCGTTGGATAGTTTGAATAATATTGCTGCTAGGTATTTTACTACTCTTACTGATTTGATGAATGTTAATGCTATGGGGACTACTGGGATCTCTGCTGGTGATATTCTTGCTATTCCTATTCCTGCCTGTGCATCAAAGTTTCCGAAAGATTCTGCTGATTTTGGATTGCTTGTCCCTAATGGAAGTTATGCTATTACAGCAGGACACTGTGTGCAGTGTAGCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCAGCTTCACTAGCTGTTTCTTGCTCGAGCATGCAATGTAAGAGCAGCAATCTTATGCTTGGTAATGTTACCGTGCAACAGACTAGTGGTGGTTGCAATGTGACTTCTTGCACTTACGATGGTATTGTTAATGGTACCATAGCAACAACGTTGACCCCATCCCTTCAGCCTCGATGTCCAGGGTCGCAGGAATTCCCTCCTCTTATCGCCCCACCTACGGTTGTTCCGAGAGAATCATTATTTGCACCGGCCCCGTCACCATCATCACTGTTCGACGGAACTGATGGGAGATCGCCCAAATCCTCAGTGGTGCCTTCAACAGGATTTACTCCTGCATTAGGCCCTAGTGGAATTTCTTCTGGTGCTTCTGCCGCATGCTCCTTGGTGAAACCATTACCCACTTTGACACTCACCCTTGTGTTATTATTTGTCAAGTTGATGATCCCTGTAGCATTGTAA 1239 0.4374 MQNKNILLLFLLFKLLITTTSKSTIEPCTTSDTCNSLLGYTLYTDLKVSELSSLFQIDPISLLTANSIDISYPDVEHHILPSKLYLKIPIQCSCIDGIRKSVSTNYKIRPSDTLSSIADSIYGGLVSSDQLREANSVTDPNVLDVGQNLVVPLPCTCFNGSDNGLPAIYMSYVVQPLDSLNNIAARYFTTLTDLMNVNAMGTTGISAGDILAIPIPACASKFPKDSADFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKSSNLMLGNVTVQQTSGGCNVTSCTYDGIVNGTIATTLTPSLQPRCPGSQEFPPLIAPPTVVPRESLFAPAPSPSSLFDGTDGRSPKSSVVPSTGFTPALGPSGISSGASAACSLVKPLPTLTLTLVLLFVKLMIPVAL* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2242 412 Pfam LysM domain 172 214 IPR018392 -
Mtr3g2242 412 Pfam LysM domain 106 152 IPR018392 -
Mtr3g2242 412 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 4 367 - -
Mtr3g2242 412 ProSiteProfiles LysM domain profile. 104 151 IPR018392 -
Mtr3g2242 412 MobiDBLite consensus disorder prediction 351 366 - -
Mtr3g2242 412 CDD LysM 106 151 IPR018392 -
Mtr3g2242 412 Gene3D LysM domain 165 223 IPR036779 -
Mtr3g2242 412 SUPERFAMILY LysM domain 170 215 IPR036779 -
Mtr3g2242 412 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Mtr3g2242 412 SUPERFAMILY LysM domain 105 153 IPR036779 -
Mtr3g2242 412 MobiDBLite consensus disorder prediction 346 366 - -
Mtr3g2242 412 SMART LysM_2 105 152 IPR018392 -
Mtr3g2242 412 SMART LysM_2 171 214 IPR018392 -
Mtr3g2242 412 Gene3D LysM domain 98 158 IPR036779 -
Mtr3g2242 412 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 4 367 - -
Mtr3g2242 412 CDD LysM 171 213 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2242 3 385 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 67.949 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2242 - - gmx:100808966 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2242 3 36047104 36050467 Mtr3g2242 3 36047104 36050467 ECH