Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0908 ATGATTGAAACTAAGGACCCTGAAATTAAGCTCTTTGGGAAGAAGATTCTTTTTCCTGGGGAAGGTGAAGCTCTTATGATTGATGGTGAGGAAAATGTTTCGCCCGCGGCGGCTATGGATGTAGAAGAAGAAAGAGATAGTGAGTCTGAGAATGAAGATGATGAAGAAGAAACGGAGAAGGATCCTGAAGCAGATAAAGATACTGAGGAAAAGAAAGAAGCTGATCCTCCACCAGATGCAGCAGAGATCAAGAACAACAACAATTCAGCAGCAACATTACCGGAGGGTAACCCAAAAACACCTTCCATAGATGAAGAAACTTCAAAATCCGAAAACGAACAAAGTGAAACAACAGCAAACAACAACGATACTCAAGAGAAAACACTAAAGAAACCAGACAAATTACTCCTGTGTCCACGCTGCAACAGCGCGGACACAAAGTTCTGTTACTACAATAATTACAACGTCAATCAGCCGCGCTATTTCTGCAAGGCGTGTCAAAGATATTGGACTGCAGGTGGAACCATGAGAAATGTTCCGGTGGGTGCAGGAAGAAGAAAAAATAAGAACAACTCTTCGTCGCATTATCGCCACATCACCATCTCTGAGGCTCTTGATGCAGCAAGAATTATTTCTCCTAATGGAACTCATCATCTTCAAAATTTGAAAACCAATGGTAGAGTTCTCAACTTTGGGTTGGATCATCCACATATCTATGATTCAATGTCAAATGATCTCAATCCTGCAGAGAAAAAGGTTCTTAACGACACTCGAAATAATGGTGATCGTTTTTCAAGTGCGTCTTCTGTTACAGTTTCAAAATCCATGGAGGAAAGTGGTAAAAACATGACACAAGAATCATTGCCACAGAAAAATAATGGTTTCATTCCCCAAGTTCCATGTATGACTAGTGTTCCTTGGCCTTATACTTGGAGTTCTGGCGCAATTCCCTCGCCGCAAACTTTGTGTCCTCCGGGATTTCCCATGTCATTTTACCCTGCTCCTTTTTGGAATGTTCCTTGGTTTCCGCCTCATACTCCCGCGACAACTCCAAGATCTAGTCCGAAATCTCCAACGCTCGGGAAACACTCGAGGGACGATGACAACACCAACGACGAAAATGCTAAACAAGACAGTTTGCAAACAGAAGAATCACCAAAACAAAGAAATGGGTGTGTTTTGGTTCCTAAAACATTGCGAATTGATGATCCAACCGAAGCTGCAAAGAGTTCAATTTGGGAAACACTTGGAATTAAGAATGAAGGTTTGAGTAGAGGTGGTATGACTAAGGCTTTTCAATCAAAGAAAGATGGTAAAAACCATGTTCAAACCTCTCCAATGTTGATGGCTAACCCTGCAGCTTTAGCTAGATCGCTTAATTTCCATGAGAACTCTTAA 1398 0.4163 MIETKDPEIKLFGKKILFPGEGEALMIDGEENVSPAAAMDVEEERDSESENEDDEEETEKDPEADKDTEEKKEADPPPDAAEIKNNNNSAATLPEGNPKTPSIDEETSKSENEQSETTANNNDTQEKTLKKPDKLLLCPRCNSADTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNNSSSHYRHITISEALDAARIISPNGTHHLQNLKTNGRVLNFGLDHPHIYDSMSNDLNPAEKKVLNDTRNNGDRFSSASSVTVSKSMEESGKNMTQESLPQKNNGFIPQVPCMTSVPWPYTWSSGAIPSPQTLCPPGFPMSFYPAPFWNVPWFPPHTPATTPRSSPKSPTLGKHSRDDDNTNDENAKQDSLQTEESPKQRNGCVLVPKTLRIDDPTEAAKSSIWETLGIKNEGLSRGGMTKAFQSKKDGKNHVQTSPMLMANPAALARSLNFHENS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0908 465 MobiDBLite consensus disorder prediction 255 292 - -
Mtr3g0908 465 MobiDBLite consensus disorder prediction 43 63 - -
Mtr3g0908 465 MobiDBLite consensus disorder prediction 347 393 - -
Mtr3g0908 465 MobiDBLite consensus disorder prediction 359 383 - -
Mtr3g0908 465 Pfam Dof domain, zinc finger 134 190 IPR003851 GO:0003677|GO:0006355
Mtr3g0908 465 PANTHER CYCLIC DOF FACTOR 2 1 464 IPR045174 GO:0003700|GO:0006355
Mtr3g0908 465 MobiDBLite consensus disorder prediction 64 79 - -
Mtr3g0908 465 PANTHER CYCLIC DOF FACTOR 1 1 464 - -
Mtr3g0908 465 MobiDBLite consensus disorder prediction 259 292 - -
Mtr3g0908 465 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Mtr3g0908 465 Coils Coil 38 58 - -
Mtr3g0908 465 MobiDBLite consensus disorder prediction 27 128 - -
Mtr3g0908 465 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Mtr3g0908 465 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0908 Mtr-Chr3 13416096 13419006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0908 1 463 C2C2-Dof Transcription Factor Family AT3G47500 46.465 1.14e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr3g0908 zf-Dof 9.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0908 - - gsj:114409713 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g0183 7 3056679 3060328 Mtr3g0908 3 13416096 13419006 ECH
Mtr6g0304 6 3712951 3716429 Mtr3g0908 3 13416096 13419006 ECH
Mtr5g1652 5 18117140 18119144 Mtr3g0908 3 13416096 13419006 ECH
Mtr3g0908 3 13416096 13419006 Mtr3g0908 3 13416096 13419006 ECH