Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0408 ATGGAGATGATACATCAAGAAAAATCTGAAATCAATGGTATCAGCGGTATACCAGGTCCACAGGAAAGGTTAGACAATCTGATGCGTCAAGCAGGGAACAAGTTCTGTGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGTATACACAGAAGCCTAGGAGTCCATATATCTAAGGTTCTGTCACTGAATCTTGATGATTGGACAGACGAACAAGTTGATTCATTGGTCAACTTGGGTGGAAATACACTAATCAATAAGAAGTACGAAGCTTGCGTGCCAAGTTACGTAAAAAAACCAAAACCGAATTCTTCCATTGAGGAGCGTTCTGATTTCATTAGGAGAAAATATGAGCTCCAACAATTTTTGGATTCCGAGGAGAATTTGATTTGTCCCTTTATACCATCCCACTCAAGAACAACTTCATCCAGTCATAGCAGTTCCTCAAGCTACAATCCTCCACAAGAAAAAAAACGTTATGATAAACAAACAACTAGAAATCGTATTGGGCTATCGTTTCGAAACAGCTGGGGAAGAAAAGATTCTGAGAGTAAGAGTACAAAGAAGAGTAACTCGTTGGCAGGTATGGTTGAATTTGTTGGATTGATTAAGGTTAATGTGGTTAAAGGCACTAACCTAGCTATCAGAGATATAGTGACTAGTGACCCTTATGTCATCCTTTCTCTTGGTCACCAGTCGGTGAAGACGCGTGTTATAAAGAACAATTTAAATCCTGTTTGGAATGAAAGCCTAATGCTGTCAATCCCTGAGAACATCCCTCCTCTTAAAATAATTGTATACGACAAAGATTCATTCAAAAACGACGATTTTATGGGAGAGGCTGAAATAGACATTCAACCATTAGTATCAGCAGCAAAAGCATATGAGAAATCATCAATCATGGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGACAATACACTTGTCAAAGATGGAATAATTTCTCTTGAAGAAGGGAAAGTGAGACAAGAAATTTCATTGAGGCTACAAAATGTTGAGAGAGGTGTTCTTGAAATTCAGCTTGAATGCGTTCCTCTTACTCAATAG 1113 0.389 MEMIHQEKSEINGISGIPGPQERLDNLMRQAGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDDWTDEQVDSLVNLGGNTLINKKYEACVPSYVKKPKPNSSIEERSDFIRRKYELQQFLDSEENLICPFIPSHSRTTSSSHSSSSSYNPPQEKKRYDKQTTRNRIGLSFRNSWGRKDSESKSTKKSNSLAGMVEFVGLIKVNVVKGTNLAIRDIVTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKIIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSIMESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQNVERGVLEIQLECVPLTQ* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0408 370 MobiDBLite consensus disorder prediction 150 167 - -
Mtr3g0408 370 CDD ArfGap 24 130 - -
Mtr3g0408 370 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 19 370 - -
Mtr3g0408 370 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 211 306 IPR035892 -
Mtr3g0408 370 CDD C2_ArfGAP 213 357 - -
Mtr3g0408 370 Pfam C2 domain 215 305 IPR000008 -
Mtr3g0408 370 Gene3D C2 domain 212 367 IPR035892 -
Mtr3g0408 370 MobiDBLite consensus disorder prediction 150 178 - -
Mtr3g0408 370 SMART arf_gap_3 22 143 IPR001164 GO:0005096
Mtr3g0408 370 Gene3D Arf GTPase activating protein 17 143 IPR038508 -
Mtr3g0408 370 ProSiteProfiles C2 domain profile. 197 312 IPR000008 -
Mtr3g0408 370 Pfam Putative GTPase activating protein for Arf 22 137 IPR001164 GO:0005096
Mtr3g0408 370 SMART C2_3c 215 310 IPR000008 -
Mtr3g0408 370 SUPERFAMILY ArfGap/RecO-like zinc finger 21 136 IPR037278 -
Mtr3g0408 370 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 19 370 IPR044518 GO:0005096|GO:0005543
Mtr3g0408 370 ProSiteProfiles ARF GTPase-activating proteins domain profile. 21 143 IPR001164 GO:0005096
Mtr3g0408 370 PRINTS HIV Rev interacting protein signature 33 52 IPR001164 GO:0005096
Mtr3g0408 370 PRINTS HIV Rev interacting protein signature 52 69 IPR001164 GO:0005096
Mtr3g0408 370 PRINTS HIV Rev interacting protein signature 73 94 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0408 Mtr-Chr3 5139448 5146009 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0408 3 5139448 5146009 Mtr8g1196 8 14612948 14618776 PCT