Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0265 ATGAGTCGAGTGAAAAATGAGATTGAAGATGATATGCTCTGCAACGATCAAACACGGTCACGGTCGAATGGTGAGGTTAATGGAGGAAGTGTTAATGGTGGAGTTGTTCTGAAGAAAGGGCCGTGGACATCTGCAGAAGATGCTATTTTGGTTGACTACGTCAGGAAGCATGGAGAAGGCAACTGGAACGCTGTTCAGAAGCATTCGGGCTTGTCTCGTTGTGGAAAAAGTTGCCGTCTGAGATGGGCAAATCACTTAAGGCCAAATTTAAAGAAAGGATCATTTACTGCTGATGAGGAGCATTTGATTGCTCAACTCCATTCCGAAATGGGAAACAGATGGGCACGTATGGCTGCGCACTTGCCTGGTCGTACAGATAATGAAATAAAGAACTATTGGAATACCCGGACCAAGAGGCGTACTCGGGCAGGCTTGCCAATCTATCCTCCAGAAGTGCGTTTGCGAGCAATAAAAGGGAGTAAACATGGCCAAAGCACTGGTGGAATCAATGATGGTGATAGAGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATGCATGATGCAATATTTGACAATTTGAAGGAAAATCAGGGAATCTTACCTATTACAATTTTGCCTGAGAATCCTGATATTTCTGCTAATAGCATTATGCGAAACAGTCTTGATTCTCCTCCATATTGCAATCCTTTGCCATCAACAATGTCTTTTCTTGGTTCAAGTGGAATGAACAAGAATTGGTTTTATCCCTTTTACCATGTTCAGGATCATAGTTCTGATAAGACCTTACAATCTTTCGAATTGCATTCTCCTCTTGATCCTGGTCTCCCCTCACATAACTCAATGTATTACCGCCATTCCGTATCAAATGGCAATTCCTCTACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTGGCTGGGGGGGTAACTTTCCCCCATCTCCACTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATTGTGCGCAAGAGTCCGGTTGTTCTTCACCAAATAATAGTGGCACGCTCGAGGCCATTATTTATCAGAAGAAGACTCTTCCAAATTCAAATAACAATTGTTCTGACAAGAGTTCACATTCATCTACTACAACTCCTGTTGACGGAGGTGAGAGTTCTGCTTTGAACATGAATGAGACAGAATGGGATGATTACGCATCTCCCTTCGGTGCAACCTCAATCCTGAATGAGTGCCATGCTGTTAACACCAATACAAACTCATGGGATAAATTGACAGCTGCTCAGAACTTTAGTGGCAGCAATGTCAAATATGAGCCTGTTGAACAAGTTTCTACCCCAAACAGTGAAAACCGATCTATGTCTATGTTGAACATCACTTGGCCAGATGTCATGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCATGAGAAGAACATGACTGAGGCTAGTGACAACCTAACAGATTATAAGCATGTGGCTGGTGGGACTTATTCTTCAAGTACAGGGGGTCGCTTTATGCACATGGCATGA 1563 0.4357 MSRVKNEIEDDMLCNDQTRSRSNGEVNGGSVNGGVVLKKGPWTSAEDAILVDYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTADEEHLIAQLHSEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRTRAGLPIYPPEVRLRAIKGSKHGQSTGGINDGDRGHHDFLPKNNYEMHDAIFDNLKENQGILPITILPENPDISANSIMRNSLDSPPYCNPLPSTMSFLGSSGMNKNWFYPFYHVQDHSSDKTLQSFELHSPLDPGLPSHNSMYYRHSVSNGNSSTSKPTSKAVKLELPSLQYPETGFGGWGGNFPPSPLNESVDVFNQSPLPHCAQESGCSSPNNSGTLEAIIYQKKTLPNSNNNCSDKSSHSSTTTPVDGGESSALNMNETEWDDYASPFGATSILNECHAVNTNTNSWDKLTAAQNFSGSNVKYEPVEQVSTPNSENRSMSMLNITWPDVMLASDWHEQCYGHEKNMTEASDNLTDYKHVAGGTYSSSTGGRFMHMA* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0265 520 Gene3D - 38 91 - -
Mtr3g0265 520 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 497 - -
Mtr3g0265 520 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 141 IPR017930 -
Mtr3g0265 520 MobiDBLite consensus disorder prediction 1 16 - -
Mtr3g0265 520 MobiDBLite consensus disorder prediction 1 33 - -
Mtr3g0265 520 MobiDBLite consensus disorder prediction 371 398 - -
Mtr3g0265 520 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 497 - -
Mtr3g0265 520 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Mtr3g0265 520 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Mtr3g0265 520 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 90 IPR017930 -
Mtr3g0265 520 CDD SANT 41 86 IPR001005 -
Mtr3g0265 520 Gene3D - 94 140 - -
Mtr3g0265 520 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Mtr3g0265 520 SMART sant 38 88 IPR001005 -
Mtr3g0265 520 SMART sant 91 139 IPR001005 -
Mtr3g0265 520 CDD SANT 94 135 IPR001005 -
Mtr3g0265 520 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Mtr3g0265 520 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0265 Mtr-Chr3 2926759 2932240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0265 36 497 MYB Transcription Factor Family AT3G11440 40.447 8.08e-98 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g0265 Myb_DNA-binding 6.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0265 3 2926759 2932240 Mtr8g1319 8 16243272 16247657 PCT