Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0257 ATGGAAGAAGGGTTAGGTCAACATTCAGTTCCTCCCCCGGGTTCCATTGACAAGTATAAGATTCTGGATATTAAGCCTATAAGAAGTTTGATACCTGTTTTTTCAAAGAATCCTCAAGGTCAATCTTCAGGTCAATATCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGTGGACCTCATGATTCTTCAACTACTGGGGCAAAGCCAAGGAGGACAGCGATGCCGACTCCACTTCAAGCATTTAGGAGCCCTTTTGGAGAGGAAGAGGATCTCAATGACAATGATGATTTTAGTAACAAAAGGAGTGCAGCATCACAGTCAACCCGGGTCAAATTGAAGAAGCATAAGGTATATAATGATGTTCATGTTGATTTGAGTGGTTTAGTTGGTATAAGCCCAGGTCAAAGAGACAATGGTAACCGTGAAGTTGTTAATACTGTGCTCATGACATTTGATGCGCTAAGAAGAAGGCTGTCTCAACTTGTAGATGCCAAGGAATTGAACACGGGTTTGATCAAACGTACGGATTTAAAAGCTGGCAATATTTGTATGACCAAAGGAATTCGAACAAACCAACCAAAGAGGGTAGGATCGGTACCTGGAGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAAATGTGTGTTGTTGGTTTGCATGCTCAATCCATGGGGGGGATTGATGCCTTGCATATCCAGGGTGACCGCGGGGAAGAGACTTTGGCTGTTAGCATTGTTTCGTCAGGAGAATACGACGATGAAGCTGATGATGGTGATGTTATAATTTATACCGGTCAGGGTGGGAATTTCAACAAGAAAGATAAGCATGTGTCAGATCAGAAGCTTCATAAGGGTAATCTTGCTTTGGATAGAAGTTCACGAACACACAATGAAATAAGAGTTATCCGAGGCATCAAAGATGCTGTGAATCCAGGTGCAAAAACCTATGTCTATGATGGTTTGTATAAAATTCAAGATTCATGGGTTGAAAAAGCAAAAGGAGGTGGTGGCTTGTTTAAGTATAAGTTGATAAGAGTGCCTGGACAACCTAGTGCCTTTGCCGTTTGGAAATCTGTTCAGAAGTGGAAAGCTGGTTTCCCTGCAAGGACCGGACTTATTCTTGCCGACCTCTCCTCGGGAGCCGAGAGTCTTCCTGTATCACTTGTCAATGAAGTCGATAACGTGAAGTCACCTGCCTTTTTCACATATTTCCACTCACTAAGACATCCGAAATCATTCAGTTTAATGCAGCCTTCACATAGTTGCAGCTGTAGTGGTAAAAAAGCATGTGTCCCCGGTGATTTGGACTGCTCATGCATTCGGAGAAACGAAGGTGATTTTCCGTATATTATCAATGGAGTTTTGGCGAATCGGAAGCCGTTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCTCAAACCGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAGGATAAAGGTTGGGGTCTTCGGTCATGGGATCCTATTCGTGCTGGTGCTTTTATTTGCGAGTATGCAGGAGAAGTTATCGATAAAGCTAGGTTAAGTCAGCTTGTACAAGAAGGAGATACTGATGAGTATGTTTTCGATACAACCCGTATTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGTTATTAGAAGAAGCGATCACAAATGAGTCTAGTGAGGATTATGCTTTGCCACACCCTCTTATTATAAACGCCAAGAATGTTGGCAATGTGGCTAGATTCATGAATCATAGTTGCTCTCCAAATGTTTTCTGGCAGCCTGTCTTATATGAAGAGAACAACCAATCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATCCCACCAATGCACGAGTTAACATATGATTATGGTTCTGACCGTTCCGATCACACTGAGGGTAGCAGTGCACGCAAAGGTAGAAAGAAATGCTTATGTGGATCATCAAACTGCCGCGGTTCTTTTACTTGA 1995 0.4216 MEEGLGQHSVPPPGSIDKYKILDIKPIRSLIPVFSKNPQGQSSGQYPSGFSPFFPFGGPHDSSTTGAKPRRTAMPTPLQAFRSPFGEEEDLNDNDDFSNKRSAASQSTRVKLKKHKVYNDVHVDLSGLVGISPGQRDNGNREVVNTVLMTFDALRRRLSQLVDAKELNTGLIKRTDLKAGNICMTKGIRTNQPKRVGSVPGVEIGDIFFFRMEMCVVGLHAQSMGGIDALHIQGDRGEETLAVSIVSSGEYDDEADDGDVIIYTGQGGNFNKKDKHVSDQKLHKGNLALDRSSRTHNEIRVIRGIKDAVNPGAKTYVYDGLYKIQDSWVEKAKGGGGLFKYKLIRVPGQPSAFAVWKSVQKWKAGFPARTGLILADLSSGAESLPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHSCSCSGKKACVPGDLDCSCIRRNEGDFPYIINGVLANRKPLVHECGPTCQCFPNCKNRVSQTGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLVQEGDTDEYVFDTTRIYESFKWNYEPKLLEEAITNESSEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMHELTYDYGSDRSDHTEGSSARKGRKKCLCGSSNCRGSFT* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0257 664 SMART preset_2 374 470 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr3g0257 664 Gene3D SET domain 367 663 IPR046341 -
Mtr3g0257 664 SUPERFAMILY PUA domain-like 179 367 IPR015947 -
Mtr3g0257 664 SMART G9a_1 192 349 IPR003105 -
Mtr3g0257 664 MobiDBLite consensus disorder prediction 631 664 - -
Mtr3g0257 664 Pfam Pre-SET motif 378 478 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr3g0257 664 Gene3D - 179 365 IPR036987 -
Mtr3g0257 664 ProSiteProfiles YDG domain profile. 197 345 IPR003105 -
Mtr3g0257 664 SUPERFAMILY SET domain 384 661 IPR046341 -
Mtr3g0257 664 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 664 IPR025794 GO:0016571
Mtr3g0257 664 SMART set_7 486 639 IPR001214 GO:0005515
Mtr3g0257 664 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 663 - -
Mtr3g0257 664 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 663 - -
Mtr3g0257 664 ProSiteProfiles SET domain profile. 486 633 IPR001214 GO:0005515
Mtr3g0257 664 MobiDBLite consensus disorder prediction 631 648 - -
Mtr3g0257 664 Pfam SET domain 497 633 IPR001214 GO:0005515
Mtr3g0257 664 Pfam SAD/SRA domain 196 349 IPR003105 -
Mtr3g0257 664 ProSiteProfiles Post-SET domain profile. 648 664 IPR003616 -
Mtr3g0257 664 MobiDBLite consensus disorder prediction 36 108 - -
Mtr3g0257 664 ProSiteProfiles Pre-SET domain profile. 420 483 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0257 Mtr-Chr3 2839426 2843642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0257 6 663 Su(var)3-9 homologs AT1G73100 51.542 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr3g0257 SAD_SRA 1.5e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0257 3 2839426 2843642 Mtr8g1328 8 16371805 16378211 PCT