Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0230 ATGGATATAGATCTCAGGTTACCCACTGGTGAACATGATAAGGAAGAAGAAGAAGAAACAACTACACTTGATAACATGTTGGAAGGTGAAGAAAAATTGCACAATGGAGGTATGGACGACAGACATATGGTTGAAGCTGGCATTGAGGTACATGCTCTAAATGGTGGAGATCTGAATTCCCCCACAGTTGATATTGCAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGTATGGAATTCGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCTCGATCAATGGGATTCAACACTGCAATACAAAATAGTCGCCGTTCAAAAACCTCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACAAAACGAGAGTATGATAAATCCTTCAACCGACCACGAGCTCGACAGAACAAGCAAGAATCTGAAAATTCAACTGGTCGAAGATCTTGCTCTAAGACCGACTGTAAAGCAAGCATGCATGTAAAAAGAAGGCAAGATGGGAAATGGGTCATTCATAGCTTTGTGAAGGAGCATAATCACGAACTTTTACCAGCCCAGGCAGTAAGTGAACAAACAAGAAGAATGTATGCTGTGATGGCCAGGCAGTTTGCAGAATACAAAACTGTGGTTGGTATCAAGAATGAAAAGAATCCGTTCGAAAAAGGTCGTAATTTGGGTCTGGAGTTTGGGGAGGCTAAACTTATGCTTGATTTTTTTATTCAGATGCAAAGTATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGGCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTCTGTGATGTAGTGTCATTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGGGTGAACCAGCACTACCAATTTATATTACTTGGGTGTGCCTTGATATCAGATGAAAGTGCCGCAACATATTCTTGGTTATTACAGACATGGCTGAAAGGTGTAGGTGGTCAAGTTCCAAAAGTTATAATTACTGACCATGACATGACTTTGAAATCAGTTATTTCAGATGTATTTCCTAGTGCTTGCCATTGTATTTGCTTATGGCATATACTGGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAACGAGAGAATTTTATGGCAAAATTTGAAAAATGCATATATAGGTCATTGACAAGTGATGATTTTGACAATAGATGGGAGAAAATTTTGGATAGATTTGAGCTTCGACAGGATGAATGCATGCAGTCTTTGTATGAAGATCGCAAGTTATGGGCACCAACATTCATGAAGGATGTGTTCTTAGGTGGCATGTCTACTGCCCAACGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAGGAAGACCTATGTGCAAGATTTTGTTAAACAGTATGAAACCATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAAGTGGCAACATTGAAAACTCCTTCACCTTTAGAAAAGAGTGTTGCAGGGATTTGCACCCATACAGTATTCAAGAAGATCCAAGCTGAGATTATTGGTGCAGTGGCTTGTCATCCTAAACTTGACAGGCAGGATGAGACAAACGTTGTTCACAGGGTGCATGATATGGAAATAAACAGAGACTTTTTTGTTGTGGTGAATGAAGTAAAATCAGAGGTGTCTTGTATATGTCGGCTATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAATATTCTGGCCATTCAGTGTTCCCATCTCAATATGTTTTGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATGTCACGGGAGAAGAATCTGAACATATGCTGGCTAGGGTGCAACGATACAATGATTTGTGTCATCGATCACTAAAACTGAGCGAAGAGGGATCATTGTCTCAAGATAGTTATAGTATTGCATTCCATGCACTAAATGAGGCGCACAAAAGTTGCGTGAGTGTTAACAATTCTAGCAAGAGTCCTGCAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCATTGAAGAAGATACCCAAAGTAGAAATATGGGAAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCGGAGGCAGAAGTGATGACTGTCGGGGCACTAGACAACATGCAACAAATGGACAAATTCAGCACAAGAACTGCAGTAACCCTCGAAGGTTATTATGGTGCACAACAGAGTGTGCAGGGAATGTTGAACTTAATGGGACCAACACGTGATGATTACTATGGGAATCAACAGACTCTTCAAGGACTGGGACCAATGAGTTCTATACCAACAAGCCACGATGGTTATTACGGTGCACATCAAAGCATGCCTGGTTTGGCACAACTGGATTTTTTGCGAACTGGTTTCACATACAGCATTAGGGATGATCCTAATGTAAGGGGAGCACAGTTACACGAAGATCCATCAAGACACGCTTGA 2535 0.3972 MDIDLRLPTGEHDKEEEEETTTLDNMLEGEEKLHNGGMDDRHMVEAGIEVHALNGGDLNSPTVDIAMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRQDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAVMARQFAEYKTVVGIKNEKNPFEKGRNLGLEFGEAKLMLDFFIQMQSMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESAATYSWLLQTWLKGVGGQVPKVIITDHDMTLKSVISDVFPSACHCICLWHILGKVSENLAPVIKKRENFMAKFEKCIYRSLTSDDFDNRWEKILDRFELRQDECMQSLYEDRKLWAPTFMKDVFLGGMSTAQRSESVNSFFDKYVHRKTYVQDFVKQYETILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHTVFKKIQAEIIGAVACHPKLDRQDETNVVHRVHDMEINRDFFVVVNEVKSEVSCICRLFEYKGYLCRHALVVLQYSGHSVFPSQYVLKRWTKDAKVRNVTGEESEHMLARVQRYNDLCHRSLKLSEEGSLSQDSYSIAFHALNEAHKSCVSVNNSSKSPAEAGTSGAHGQLSIEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNMQQMDKFSTRTAVTLEGYYGAQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPMSSIPTSHDGYYGAHQSMPGLAQLDFLRTGFTYSIRDDPNVRGAQLHEDPSRHA* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0230 844 MobiDBLite consensus disorder prediction 679 707 - -
Mtr3g0230 844 Pfam FAR1 DNA-binding domain 90 192 IPR004330 -
Mtr3g0230 844 MobiDBLite consensus disorder prediction 1 21 - -
Mtr3g0230 844 MobiDBLite consensus disorder prediction 1 16 - -
Mtr3g0230 844 Pfam SWIM zinc finger 570 603 IPR007527 GO:0008270
Mtr3g0230 844 Pfam MULE transposase domain 289 381 IPR018289 -
Mtr3g0230 844 MobiDBLite consensus disorder prediction 679 729 - -
Mtr3g0230 844 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 48 779 - -
Mtr3g0230 844 ProSiteProfiles Zinc finger SWIM-type profile. 569 605 IPR007527 GO:0008270
Mtr3g0230 844 MobiDBLite consensus disorder prediction 133 165 - -
Mtr3g0230 844 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 48 779 IPR031052 GO:0006355
Mtr3g0230 844 SMART 26again6 580 607 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0230 Mtr-Chr3 2551185 2560517 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr3g0230 FAR1 2.1e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0230 3 2551185 2560517 Mtr8g1355 8 16687822 16690775 PCT