Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3201 ATGGATCCTTCTTGTGGACAACCTCAGCAAATGTCAAGCCAATCATCAATGGAAAACATGTTAGGTTGCTCAAAAGAAGAGCAAGAAAGGAAGCCAAAACCTCAACCAGAACAAGCTTTGAATTGTCCAAGATGCAACTCAACCAACACCAAATTCTGTTATTACAACAACTACAGTCTTACTCAGCCAAGATATTTCTGCAAATCTTGCAGAAGGTATTGGACCAAAGGTGGAACATTAAGGAATGTTCCTGTTGGAGGTGGATGCAGAAAAAACAAAAGATCATCACCATCATCATCATCATCTTCAAAGAGGGTTCAAGACCAAACATTCGCACCAAATCTCAATCCCTTTAATAACCTCCCTCATTCATCTTATGATCATAATTCCAATGATTTTGCATTGGCATTAGCTAGGCTTCAAAAACAATCATGTGGACAAATGGGTTATGATGATCATGATGTTTCAAATCTAGGAAATTCAGGCATGAACAACCATTCAGCTATAAATCATGGATTTATGGATGCAATTAGAAGTGGGTTATTTCTTGGAAATGGACTACATTATAATAATAATGTTCAGAATATGTATGGTGTGTATGGAAATGGGGACAATGGTGAAGTAAATAGTGGAAACAATGCAAATAACAATGCTTGTGGGGTTAGTGAAGAGATGATGTTTCCCTATGATCAAGAAATTAACAATGTGAAGCAAGAAATGTGCAGTGGAAGGGAACAAATTAGTGAGAGTAAAGTTTTTGGTGGTTTTCCATGGCAGCTGAATGGAGGATCAAACATCGGTGAAGTTGAATCGGCAAGACCAAGTTGGAATAATGGTTTCACATCTCCTTGGCAAGGGCTTCTTCATAGTCCCCTAATGTAG 882 0.381 MDPSCGQPQQMSSQSSMENMLGCSKEEQERKPKPQPEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSPSSSSSSKRVQDQTFAPNLNPFNNLPHSSYDHNSNDFALALARLQKQSCGQMGYDDHDVSNLGNSGMNNHSAINHGFMDAIRSGLFLGNGLHYNNNVQNMYGVYGNGDNGEVNSGNNANNNACGVSEEMMFPYDQEINNVKQEMCSGREQISESKVFGGFPWQLNGGSNIGEVESARPSWNNGFTSPWQGLLHSPLM* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3201 293 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Mtr2g3201 293 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 9 292 - -
Mtr2g3201 293 MobiDBLite consensus disorder prediction 1 41 - -
Mtr2g3201 293 MobiDBLite consensus disorder prediction 92 123 - -
Mtr2g3201 293 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Mtr2g3201 293 MobiDBLite consensus disorder prediction 1 22 - -
Mtr2g3201 293 MobiDBLite consensus disorder prediction 84 123 - -
Mtr2g3201 293 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Mtr2g3201 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 292 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3201 Mtr-Chr2 45846895 45849231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3201 38 293 C2C2-Dof Transcription Factor Family AT2G28510 44.322 3.02e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr2g3201 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3201 - - gmx:100799737 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3201 2 45846895 45849231 Mtr4g1780 4 30692329 30694081 PCT