Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2372 ATGGCCACTGTTATCACTGCTGACATTTCAGCTGATGCCAACAAAATGGACTCAAAACCAAAAGCTGAATCTGAATTCAGTGTTCAGAAACTTGTTGACATGTTCACAAAGCTGAATCCTTTGGCTAAGGAATTTTTTCCTTCATCTTATTCTCCTAATCATGATCATGGCCGTCAAGGGTTTAATCTCATCACTCCTAACCATTTTCTGGTCAACACTAAGCCTTCTGCTAATGATAATAACCCAAATAATCGAAGGAGGAGAAACAATTTTACCCAAGGGAGGAGAAGGTTGAACGGAAGATCGCTAAAGGCTCAGAGAGAAGATAGCGTTAGAAGAACTGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAATTGTGGACAAGTTATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCTGATGAACATGGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTGAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGTCGGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGACAAAAAGATTTCTCAAGCTGAAGTGAAAAACTTCTTTGAATCATCCTGTGGCGAGGTTACGCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTGTTGCACTAAACTGTAGCGGCATGCTTTTGGGAACTCAACCTATCAGGGTAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTTGCTCGTCCTGTATCGCGTTAA 897 0.4314 MATVITADISADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGRQGFNLITPNHFLVNTKPSANDNNPNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNCSGMLLGTQPIRVSPSKTPVRPRVARPVSR* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2372 298 MobiDBLite consensus disorder prediction 72 88 - -
Mtr2g2372 298 Gene3D - 71 189 IPR012677 -
Mtr2g2372 298 Gene3D - 198 291 IPR012677 -
Mtr2g2372 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 279 IPR000504 GO:0003723
Mtr2g2372 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Mtr2g2372 298 MobiDBLite consensus disorder prediction 72 105 - -
Mtr2g2372 298 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 14 297 - -
Mtr2g2372 298 SUPERFAMILY RNA-binding domain, RBD 200 291 IPR035979 GO:0003676
Mtr2g2372 298 CDD RRM1_CID8_like 111 190 IPR034823 -
Mtr2g2372 298 SUPERFAMILY RNA-binding domain, RBD 77 189 IPR035979 GO:0003676
Mtr2g2372 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 286 IPR000504 GO:0003723
Mtr2g2372 298 SMART rrm1_1 211 282 IPR000504 GO:0003723
Mtr2g2372 298 SMART rrm1_1 114 184 IPR000504 GO:0003723
Mtr2g2372 298 Pfam Ataxin-2 C-terminal region 34 49 IPR009818 -
Mtr2g2372 298 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 14 297 - -
Mtr2g2372 298 CDD RRM2_CID8_like 206 287 IPR034825 -
Mtr2g2372 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2372 Mtr-Chr2 35790479 35796533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2372 110 267 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 3.36e-11 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2372 2 35790479 35796533 Mtr2g2372 2 35790479 35796533 ECH