Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2292 ATGGGTATGAACGAGGATTTCAACATGGATAATGAATATGTTGTAGATGGTGATGATGATGTTCCACTTCCTGGATTTCGATTCCATCCCACTGATGAAGAACTTGTTACTTTTTATCTTAGAAGAAAACTTGACAAGAAACCTATTGCTATTGATCTTATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCAAATGTACCTGGAGCAGAAAAGGAAGGTTACTTTTTTTGCCAAAGAGGAAGAAAATATAGGAACAGCGTTAGGCCAAATAGAGTGACTGGCTCTGGATTCTGGAAAGCAACTGGAATAGACAAAGCAATTTACTCAAATGGAGCAGAAGGAAATGATTGTGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGTGCCGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCATCAAACATTGATGCCAAAACAAACATTTCCTATCCTAAGAATGTTGCTGATTATGCTCATGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTATCAAAAAGTAAAAGCATGGCAGATGTGAAACCCTTAGCTACCAAGCATCGAACCATTCATGAAAAGAGTAGTAGAATGAATAGCAATATGGAGTTGAACACAAATCAACAAACATATATCAATTTTGGACAAACCATTCATGAGCATCATTACAACGATGACAAACCAATCAATAATCATACAAGCAGTGATCAAAGGAATCAATTTCATGTAGATCAATTGAGCTCTTCAGTGGAATATCAACCTCAACAAATTAATGTAACACAATCTTCAAATTTTTGGATTAAGCAAGCTGCTAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAATTTTGTTTCAGATTCACCTAGTATGTAA 939 0.3514 MGMNEDFNMDNEYVVDGDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKANVPGAEKEGYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSNGAEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNIDAKTNISYPKNVADYAHEAEIWTLCRIFKRNVSKSKSMADVKPLATKHRTIHEKSSRMNSNMELNTNQQTYINFGQTIHEHHYNDDKPINNHTSSDQRNQFHVDQLSSSVEYQPQQINVTQSSNFWIKQAANELLSFDNWDELGSVVNFVSDSPSM* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2292 312 ProSiteProfiles NAC domain profile. 22 186 IPR003441 GO:0003677|GO:0006355
Mtr2g2292 312 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Mtr2g2292 312 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 308 - -
Mtr2g2292 312 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 11 308 - -
Mtr2g2292 312 SUPERFAMILY NAC domain 22 186 IPR036093 GO:0003677|GO:0006355
Mtr2g2292 312 Gene3D NAC domain 31 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2292 Mtr-Chr2 34690154 34692704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2292 15 194 NAC Transcription Factor Family AT5G39820 58.031 6.51e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr2g2292 NAM 2.8e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2292 2 34690154 34692704 Mtr2g2292 2 34690154 34692704 ECH