Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0393 ATGTTATCTAACTATGAGAAAATGCTTGTCATCCCTCCAACCACTAATCAATGGACACAGAATCAAATAGATGATGTTAAGATAATGGAAAAACAAGGTCAAAAACTTCATCAGCAGCAGCAACAACAAGCTCTCAAGTGTCCACGTTGTGACTCATCAAACACAAAGTTTTGTTACTACAACAACTACAGTTTGTCACAACCAAGACATTTCTGTAAAGCTTGCAAACGTTATTGGACAAGAGGTGGTACTCTTAGAAATGTTCCTGTTGGTGGTGGTTACAGAAGAAACAACTCAAACAAACGTAGTAACAATACTACTCTCATCAAAATACCCTCCACCATTGATACTTCTATTTCTTCTTCTCCTTCAACTCCTAGTTCCACACCAAACACCACTTCTTCAAATTCAACCTTAAATCATAATATTAGTCCTATGTTTTATGGTTTATCAAGTAGTAACTCTTGTGATGTGAATCTTCCATTCTCAAGGTTCAATATCTCTAGACTCTCAACAAGTTCAGGTTATGATTTTCAGCCTCAGATGAATACTATTGGATTAGGCTTTTCATCTGGGTTTACGTCCAGTGAAGCCAATGATCATAATGGTTATACAAATGGATTTACTTCAAGATATGGTTCAATCTTTAGTTCTTCTTCTGTACCAAGTAATGCATCAGTTATGCCTTCTCTGCTGCAACATAAATTCATCAATGATGGTAGCAACAGTTTTCAGGGCTTGGAATTCAACAATTTGGGGAATGGAAGTGAGAAAGGAACGAAGAAAGATGAAGGAGAGATGGAGCATGTGGGTGGTTTGTATGATCCAGCTGCTTCTTCACTTTACTGGAATACAGCATCATCATCAGCTATTGGTGTTTGGAACGATCAAGCTTCTAATATTGGTTCATCAGTTACTTCTTTGATCTAG 930 0.372 MLSNYEKMLVIPPTTNQWTQNQIDDVKIMEKQGQKLHQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNSNKRSNNTTLIKIPSTIDTSISSSPSTPSSTPNTTSSNSTLNHNISPMFYGLSSSNSCDVNLPFSRFNISRLSTSSGYDFQPQMNTIGLGFSSGFTSSEANDHNGYTNGFTSRYGSIFSSSSVPSNASVMPSLLQHKFINDGSNSFQGLEFNNLGNGSEKGTKKDEGEMEHVGGLYDPAASSLYWNTASSSAIGVWNDQASNIGSSVTSLI* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0393 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 243 IPR045174 GO:0003700|GO:0006355
Mtr2g0393 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 2 243 - -
Mtr2g0393 309 MobiDBLite consensus disorder prediction 90 137 - -
Mtr2g0393 309 Pfam Dof domain, zinc finger 43 99 IPR003851 GO:0003677|GO:0006355
Mtr2g0393 309 MobiDBLite consensus disorder prediction 93 137 - -
Mtr2g0393 309 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Mtr2g0393 309 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0393 Mtr-Chr2 3961267 3965311 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0393 45 309 C2C2-Dof Transcription Factor Family AT1G28310 39.322 7.44e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr2g0393 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0393 - - mtr:MTR_2g014170 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0393 2 3961267 3965311 Mtr2g0393 2 3961267 3965311 ECH