Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4254 ATGTATCGGGAGTCCGTTGCTATGGCTACCACCACCGCCGCGACGCGGTGGCCGACTCAGCCAACTCAGTGGACTCGAGACCATGACAAGCTGTTCGAGCGAGCTCTGCTGATGGTGCCGGAGGATTTGCCGGACCGGTGGGAGAAGATCGCCGAACAAGTTCCTGGTAAGTCTGCGGCGGAAATTAGGGATCACTATGAAGCTTTGGTTCATGATATACTGGAAATTGATTCGGGTCGGGTTGAGGTGCCGAGTTATTCTGATGAATCGGCTGTGAGTGGTGGTGGATTGGCTGAATGGGATTCTTCGAATCAAATTTCGTTTGGTTCGAAGCCGAGACATGGCGGTGATAACGAGAGGAAGAAAGGAACTCCATGGACTGAAGAAGAACACAGGCTGTTTCTTATTGGGCTGACCAAATTTGGGAAAGGAGATTGGAGAAGCATTTCAAGGAATGTTGTTGTGACAAGAACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTTCTTCGCCAGAATTCGGTGAAGAAAGAGAGGAAAAGATCAAGTATTCATGACATTACATCAGTGGACAGTAACTCAGCTCCTGTGCCTATTGATCAGAACTGGGTTCCTCCTCCTGGTGGTGGTTCAATGCAACAACAGTCTCCAGAAATGCATCATTATCCATCAAACAATTTGCAAGATCAAATGAGTGCATATGGGTATTCAAACTATGGCTTTCAAATGTAA 735 0.4748 MYRESVAMATTTAATRWPTQPTQWTRDHDKLFERALLMVPEDLPDRWEKIAEQVPGKSAAEIRDHYEALVHDILEIDSGRVEVPSYSDESAVSGGGLAEWDSSNQISFGSKPRHGGDNERKKGTPWTEEEHRLFLIGLTKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITSVDSNSAPVPIDQNWVPPPGGGSMQQQSPEMHHYPSNNLQDQMSAYGYSNYGFQM* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4254 244 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 19 244 - -
Mtr1g4254 244 MobiDBLite consensus disorder prediction 97 111 - -
Mtr1g4254 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Mtr1g4254 244 MobiDBLite consensus disorder prediction 92 125 - -
Mtr1g4254 244 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Mtr1g4254 244 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Mtr1g4254 244 SUPERFAMILY Homeodomain-like 120 175 IPR009057 -
Mtr1g4254 244 ProSiteProfiles SANT domain profile. 121 174 IPR017884 -
Mtr1g4254 244 Gene3D - 19 83 - -
Mtr1g4254 244 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 244 IPR043363 -
Mtr1g4254 244 MobiDBLite consensus disorder prediction 180 199 - -
Mtr1g4254 244 CDD SANT 24 70 IPR001005 -
Mtr1g4254 244 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
Mtr1g4254 244 SMART sant 20 72 IPR001005 -
Mtr1g4254 244 SMART sant 122 172 IPR001005 -
Mtr1g4254 244 ProSiteProfiles Myb-like domain profile. 24 70 IPR001005 -
Mtr1g4254 244 Pfam Myb-like DNA-binding domain 125 170 IPR001005 -
Mtr1g4254 244 Pfam Myb-like DNA-binding domain 23 66 IPR001005 -
Mtr1g4254 244 Gene3D - 124 176 - -
Mtr1g4254 244 CDD SANT 125 170 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4254 Mtr-Chr1 54252555 54254898 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g4254 Myb_DNA-binding 9.9e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4254 1 54252555 54254898 Mtr1g4254 1 54252555 54254898 ECH