Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4232 ATGGCAGATAACAGTCAAAAGACAGAAGATTTTGACACTGATGATAAAAATAATCAATGTTTATCAACCGTGTCTTGGTGCAATGGTGTTGGAAATGAGGCTCTTGTAGTTGTTGAATCCAAGGATCAATGCAAGACTAAGGGTCAATCTGATGAGCACAAGACTCTTCGTCGGCTGATGCAGAATCGCGAGGCTGCAAGGAAAAGTAGGTTAAGGAAAAAGGCTTATGTGCAACAATTGGAGAACAGTCGACTTAGGCTTGCTCAAATAGAACATGAGCTTCAACAAGGTACATTTGTTGCACCTGGAGTTACAGCGGATCATGGTCATTCAATTGTTGGAAACAGTAATGCAGGTTCGGTAGCATTTGATATGGACTATGCTCGTTGGGTAGACGAGCATCAACGACTAATCAATGACATAAGATCAGCTATAAATTCTCAAATGGGTGATAATGAACTGCATCTTCTTGTTGATGGTGTCATGGTACATTATGATGAATTATACAAGTTGAAGAGCATAGGTGCAAAGGCTGATGTATTTCACATACTTTCTGGGTTGTGGAAGACACCTGCAGAAAGATGTTTCATGTGGCTTGGTGGATTCCGTTCATCCGAACTTCTCAAGATAATTAGAAACCACCTCGAGGCGTTAACGGATCAGCAATTGATGGCGATCTTCAATCTGCAGCATTCTTGTCAACAGGCTGAAGATGCATTATCTCAAGGAATGGAAGGTTTGCAACAATCTCTTTCAGAGACACTTTCCTCCACGTCCACTGGATCTGGAAATGTTGTTGAGTATATGGGTCAAATGGCTCTTTCAATGGCCAAGCTTTCCACACTGGAGACTTTCATTCATCAGGCAGATATCTTGAGGCAACAAACACTGCAACAGATGCGTCGAATTTTGACTGCGCACCAAGCTGCTCGTGCTCTCCTTGTCATAAATGATTTCATTTCACGAATCAGAGCTCTTAATTCATTATGGTCAGCATTTCCTAAAGAATACTAA 1014 0.4152 MADNSQKTEDFDTDDKNNQCLSTVSWCNGVGNEALVVVESKDQCKTKGQSDEHKTLRRLMQNREAARKSRLRKKAYVQQLENSRLRLAQIEHELQQGTFVAPGVTADHGHSIVGNSNAGSVAFDMDYARWVDEHQRLINDIRSAINSQMGDNELHLLVDGVMVHYDELYKLKSIGAKADVFHILSGLWKTPAERCFMWLGGFRSSELLKIIRNHLEALTDQQLMAIFNLQHSCQQAEDALSQGMEGLQQSLSETLSSTSTGSGNVVEYMGQMALSMAKLSTLETFIHQADILRQQTLQQMRRILTAHQAARALLVINDFISRIRALNSLWSAFPKEY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4232 337 Coils Coil 73 93 - -
Mtr1g4232 337 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 52 96 IPR004827 GO:0003700|GO:0006355
Mtr1g4232 337 PANTHER TRANSCRIPTION FACTOR TGA9 1 336 - -
Mtr1g4232 337 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 1 336 - -
Mtr1g4232 337 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 57 72 IPR004827 GO:0003700|GO:0006355
Mtr1g4232 337 SMART brlzneu 50 117 IPR004827 GO:0003700|GO:0006355
Mtr1g4232 337 Pfam bZIP transcription factor 52 82 IPR004827 GO:0003700|GO:0006355
Mtr1g4232 337 SUPERFAMILY Leucine zipper domain 55 96 IPR046347 GO:0003700|GO:0006355
Mtr1g4232 337 Gene3D - 54 97 - -
Mtr1g4232 337 Pfam Seed dormancy control 138 212 IPR025422 GO:0006351|GO:0043565
Mtr1g4232 337 ProSiteProfiles DOG1 domain profile. 120 333 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4232 Mtr-Chr1 53964385 53967036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4232 28 336 bZIP Transcription Factor Family AT1G68640 65.190 5.23e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr1g4232 DOG1 3.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4232 1 53964385 53967036 Mtr1g4232 1 53964385 53967036 ECH