Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4211 ATGCGGGTTTATTTGGCTTATCAAAATAGTTTCTTTGAGAAGTCAAAGACTGTAACAAGGAGAAAGGCATGTCTTTCAACACAACGTCAAACCAAGAAGAAAGTTGTTCCAACAATATCTCCTCCAAAAACAAAGAGACAATCTTCATCCAAATACCGAGGTGTTCGTTTAAGGCCATGGGGAAAATGGGCTGCTGAGATTCGTAATCCTTATACAAATGTTAGATTTTGGTTGGGAACTTACGATACCGCCGAAGATGCTTCTCAAGCTTGTGAATCTAAAAGGCTTCAATTTAAACTCGATCATGAGGCAGATATAGCAAAAATATGCTTCGATAAAAGTTCTTCTACAACCCCTCTAGTTGCAACATTGAACAAGAACTCTTATGTAGATGATGATGTTGCCAATGCTTTAGTGTCAGAGAAATGTTCAACTGCTAAAGAATATGAGAGCTTGTTCTCACAAATATCACCTTCTTCCGTGCTTGAGTTGGATACCTTAGCATCCAATCCGATTGAGAAGGTTGATGTTCCATCAAACAATGAAGTTGTTGTTGTTGTTGATGAAGCGAGTGAAATGCTGACTTGTCAACTTCAAGAGCTAGAAATTCCAAATCAGAGTGTTTGTAACTTTCCCGAACCAGTTGCTGTTGAGAATCCAATTGGGATTGATCCCAATCTTGGTTTGGGATTGGATTTTGCTCGGTTTAACATTGATGATTTTGGACCAGATTTTGAAGAATTTGGCGACATAGGTGACTTCGAGGATATTCAAGTTCATGGTTTTGATGACAATGAACCTAGTGAGCTTCCTGATTTTGATTTTGGTGATATTGGTGATGATGATGAATTTGCTGGTTGGATTAAAGAGCCCTTCCAACACAATATATGTTATCTCTAA 900 0.3822 MRVYLAYQNSFFEKSKTVTRRKACLSTQRQTKKKVVPTISPPKTKRQSSSKYRGVRLRPWGKWAAEIRNPYTNVRFWLGTYDTAEDASQACESKRLQFKLDHEADIAKICFDKSSSTTPLVATLNKNSYVDDDVANALVSEKCSTAKEYESLFSQISPSSVLELDTLASNPIEKVDVPSNNEVVVVVDEASEMLTCQLQELEIPNQSVCNFPEPVAVENPIGIDPNLGLGLDFARFNIDDFGPDFEEFGDIGDFEDIQVHGFDDNEPSELPDFDFGDIGDDDEFAGWIKEPFQHNICYL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4211 299 Gene3D AP2/ERF domain 50 112 IPR036955 GO:0003700|GO:0006355
Mtr1g4211 299 ProSiteProfiles AP2/ERF domain profile. 51 112 IPR001471 GO:0003700|GO:0006355
Mtr1g4211 299 SMART rav1_2 51 105 IPR001471 GO:0003700|GO:0006355
Mtr1g4211 299 SUPERFAMILY DNA-binding domain 50 97 IPR016177 GO:0003677
Mtr1g4211 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 279 - -
Mtr1g4211 299 MobiDBLite consensus disorder prediction 31 51 - -
Mtr1g4211 299 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 30 279 - -
Mtr1g4211 299 Pfam AP2 domain 50 95 IPR001471 GO:0003700|GO:0006355
Mtr1g4211 299 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Mtr1g4211 299 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Mtr1g4211 299 MobiDBLite consensus disorder prediction 31 48 - -
Mtr1g4211 299 CDD AP2 50 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4211 Mtr-Chr1 53791103 53792191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4211 30 280 AP2-EREBP Transcription Factor Family AT1G68550 30.037 6.41e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g4211 AP2 9.5e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4211 1 53791103 53792191 Mtr1g4211 1 53791103 53792191 ECH