Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4209 ATGACTTGTTCAAGTAAAAACGTAGCAAACGCAGTTGGAGGCAAAACTGCTAGGGCTTGTGACAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTCTGTCAAGCTTGTGACTCTTCTGTTCATTCAGCTAATTCTTTAGCTCGAAGACATGAAAGAGTTCGTTTGAAAACAGCTTCGTACAAGTCCATTAATGGTGATGAATTCTTCAATTGTGGTCCTTTCTCTGGCTTCACCAAGAAGGCAAGAACACCGAGACAGGGGAAACACAAATCAAAATCATCCTCGAGCAGCGAACCAGCAAGGAATAATAATAATATTCCGTTTCATCTTGTGCCGGAATTAGGTTTCGATGAAGTTAATTCAAATTCCATTGAGGAAAATGAGGCGCAACTTCTTTACAGGGTACCAATTTTCGATCCTTCTATTGCTGATTTATGTACTAGTCCTCCTTCAGTTTGTTCAACTGAAGGAGGACTGGGAGTGGTAGTTGTTGCTTCTGCTTTCGCTCCTGATGTTAAAAACAATGAGAGCGAAAGCAGAGTTCAACTAGGTAGTGATAATAATTATGAGATGGAAAGCTTTCACGGGCTTCTTCCATCTGATATTGAATTAGCCGAATTTGCAGCTGATGTTGAGAGCTTATTGGGTAGGGGATTAGAAAATGAGTGTATAGGGATGGAAGAGTTGGGATTGATTGATACAAAGCATGAGGAGAGTGAGAAGTGGAAGTGTGGTGGAAAGGTGAAGGAAGAAGGTGAAGAGTGTTATGAAGTTGTTGAGGGAGATAATATGATGGAGATTGGAAAAGAATCTTCATTTGAGTTGAATTTTGATTATGATGATTCTCATGAAACATGTGAAGAGGTGAAGGAGAAGTGTGGAGAACAAAATGAAAATAATGATTATAATAAGGGGAAAAGAAAAATATCTTTGCAGCTAGATTATGATGCAGTAATCATTGCATGGGATAGCCAGAAGTGTCCCTGGACTAATGGTGACAAGCCAATTTTGGATGCTGATGAGAACTGGCCCGATTGCATGGGAACTTTCGGAACGGAGGTTCATTATGCTTATGGTGAGTTTGGTGGATATGGATGTCATCCAGTAATGGTAGATGGAGGCAGAGAAGCAAGGGTTTCGAGGTACAGAGAAAAGCGAAGAACAAGGTTGTTCTCAAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGATTTGTGAAGAGGGCTTCCTTTGCAGTTCCAACATTTCCTTTGCTAAAATAA 1311 0.4043 MTCSSKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSINGDEFFNCGPFSGFTKKARTPRQGKHKSKSSSSSEPARNNNNIPFHLVPELGFDEVNSNSIEENEAQLLYRVPIFDPSIADLCTSPPSVCSTEGGLGVVVVASAFAPDVKNNESESRVQLGSDNNYEMESFHGLLPSDIELAEFAADVESLLGRGLENECIGMEELGLIDTKHEESEKWKCGGKVKEEGEECYEVVEGDNMMEIGKESSFELNFDYDDSHETCEEVKEKCGEQNENNDYNKGKRKISLQLDYDAVIIAWDSQKCPWTNGDKPILDADENWPDCMGTFGTEVHYAYGEFGGYGCHPVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4209 436 ProSiteProfiles CCT domain profile. 382 424 IPR010402 GO:0005515
Mtr1g4209 436 SMART bboxneu5 15 62 IPR000315 GO:0008270
Mtr1g4209 436 MobiDBLite consensus disorder prediction 86 113 - -
Mtr1g4209 436 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Mtr1g4209 436 CDD Bbox1_BBX-like 19 62 - -
Mtr1g4209 436 Pfam CCT motif 382 424 IPR010402 GO:0005515
Mtr1g4209 436 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 4 429 - -
Mtr1g4209 436 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 429 - -
Mtr1g4209 436 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4209 Mtr-Chr1 53743859 53745954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4209 6 424 C2C2-CO-like Transcription Factor Family AT1G25440 45.622 2.73e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr1g4209 zf-B_box 9.7e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4209 1 53743859 53745954 Mtr1g4209 1 53743859 53745954 ECH