Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4208 ATGAAGTTGAGTTGCAATGGGTGTCGTGTGCTCCGCAAAGGTTGCAGTGATGATTGTATCATCAAGCCCTGCCTTGAGTGGATCAGTTGCCCTGAATCCCAAGGGCATGCCACCCTCTTCCTTGCCAAATTTTATGGCCGAACTGGTTTGCTCAATCTCCTCACCAATGCTACCAATCAAAATGACAATCCCCCAGCTGTGTTTAAATCATTGTTGTACGAGGCAGCTGGCAGATTGGTGAATCCCACATATGGGGCGCTTGGCTTATTCTGGACAGCGGATTGGAGTCGTTGTGAAGCTGCAGTTGAAGCTGTGCTGACTGGATCAAATATTAATGACAGTTTTACAATGATTGATGGGCAAACATCATCAGGTACATTCAATGCTGAAAATCATGTTCACCCCAAAACCTATGATATACGCCATGTGGCAAAAGGTACCAATGTGGACATCAAAGGGAAAACTCAATTCAAAAGAGTTGGGCAACTTCTGAAGCTCAAGCCACGAGTTGGTTCAGTCGACTCATCTACAATGTTGAAATCCCTTTTGAAGAATACCAACATGGAAATTGGGGAGACTTCATCAAGGGTTCAAACAGAGAAAATTAATGAAGCTGTTGAGAATCAAGTGAATTTGAAACTCACTCTTGGCTTTGATTGCCAATCAACTAAGGGCAAGAAAATATTAGATAAACGATCGATTTATTATATGTAA 714 0.4244 MKLSCNGCRVLRKGCSDDCIIKPCLEWISCPESQGHATLFLAKFYGRTGLLNLLTNATNQNDNPPAVFKSLLYEAAGRLVNPTYGALGLFWTADWSRCEAAVEAVLTGSNINDSFTMIDGQTSSGTFNAENHVHPKTYDIRHVAKGTNVDIKGKTQFKRVGQLLKLKPRVGSVDSSTMLKSLLKNTNMEIGETSSRVQTEKINEAVENQVNLKLTLGFDCQSTKGKKILDKRSIYYM* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4208 237 ProSiteProfiles LOB domain profile. 3 111 IPR004883 -
Mtr1g4208 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 229 - -
Mtr1g4208 237 Pfam Lateral organ boundaries (LOB) domain 4 106 IPR004883 -
Mtr1g4208 237 PANTHER LOB DOMAIN PROTEIN 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4208 Mtr-Chr1 53731402 53732420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4208 1 145 AS2 family AT1G68510 53.741 1.79e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr1g4208 LOB 7.1e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4208 1 53731402 53732420 Mtr1g4208 1 53731402 53732420 ECH
Mtr1g4208 1 53731402 53732420 Mtr6g0593 6 7168396 7170453 ECH