Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4203 ATGAGACCGCAAGGAAACCCATTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGTAAACAACTCCTTGAAGACACTGATCTACCCGGTTGCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGATGAGTGTGGGAAGGTCTATGAATGTAGATTCTGTTCCCTCAAGTTCTGTAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACTGAGACGCTTAACCATGCACGTCAGCTAGTCTTCCGTAACGATCATAACCTTGCACCACAACCAGCTCCCTCTCACCTTGTAGGATGTTGTCCACCACCAATACCAACAGCAGGATATATTCCAGCAAATAACATGGGAGATCAAACAATTCCTATGAGATTTCCAAGATATTTCTCAGGTTCATCTTCAACCCACATTCCACCACCACCACCACCACCACAACCATCTCAACCATATCTGTACTCTTCACCTACACGCCCAGTGTCTTTCCCAACACATTTGATTCCTCAGCATCCAATGAATGAATATCATGTGGGTCACGTGATGAGTAGCAGTCACCACCAGCAATATCACAACATGAACTATGTTGCAGGTGCAGGTGGTGGTGAGTCAAGTTACACTTGCATAGGTGCACCGGTTAGACAAGGTTTTATTCCAGGAAGTAGTGGTGGGAAGGATCATCATCAAGATATGGAAGGGACATTGAATTGGGGAAGGAGCTATTCAGGAGGTGGAGGAGGAGGACAGCAGCATCGTTTAGATACAAATACTCCTAATTCAGCAGCATTGATCAATCGGTTTCAAGATGGTTTCTAA 837 0.4516 MRPQGNPLDLNNLPDEYSRDHGKQLLEDTDLPGCRKKKNGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNLAPQPAPSHLVGCCPPPIPTAGYIPANNMGDQTIPMRFPRYFSGSSSTHIPPPPPPPQPSQPYLYSSPTRPVSFPTHLIPQHPMNEYHVGHVMSSSHHQQYHNMNYVAGAGGGESSYTCIGAPVRQGFIPGSSGGKDHHQDMEGTLNWGRSYSGGGGGGQQHRLDTNTPNSAALINRFQDGF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4203 278 MobiDBLite consensus disorder prediction 14 45 - -
Mtr1g4203 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Mtr1g4203 278 PANTHER ZINC FINGER PROTEIN JAGGED 1 261 IPR045320 GO:0003700
Mtr1g4203 278 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
Mtr1g4203 278 MobiDBLite consensus disorder prediction 144 160 - -
Mtr1g4203 278 Gene3D Classic Zinc Finger 35 101 - -
Mtr1g4203 278 MobiDBLite consensus disorder prediction 131 160 - -
Mtr1g4203 278 PANTHER ZINC FINGER PROTEIN JAGGED 1 261 IPR031113 GO:0007275
Mtr1g4203 278 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Mtr1g4203 278 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4203 Mtr-Chr1 53641669 53644498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4203 4 223 C2H2 Transcription Factor Family AT1G13400 42.411 1.03e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g4203 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4203 1 53641669 53644498 Mtr1g4203 1 53641669 53644498 ECH