Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4200 ATGCCAACAACAACAACAACACCTTCATTTCTCTCACCTCCTCACTCTCAACGTCATTATCATAAACCCATTCAATTTCACCACTATTCACACACCCTTTTTACTCCTTCCTCTTCCTCCGCCACCCACACCAGGCGGCGGCCCCACTGCCCTCGCATGGAAATCTCCCCCTCACGCCACCGTCGGAAAGACAAAGTCCTCATTATAGTCGGTGCAACCGGCTCCGGAAAATCACGTCTCTCCGTTGAACTCGCCACCCTCTTCCCTTACTCAGAAATAATTAATTCCGACAAAATCCAAGTGTACAGAGGACTCGATATCACCACCAACAAGATCCCATTTCATCAACGCAACAACGTTCCACATCATCTTCTCGGCGACATTGATCCTTCTCACGGTGAGTTCTCACCTTCAGATTTCCGCCGCCACGCCGGAGATATCATCTCCGATATTACTTCCCGGAGAAAACTTCCCATTATCGTTGGTGGGTCCAACTCATTCATTCACGCTCTTCTTGTAGAACGATTCGACCCTGAGTCAAACGTTTTCGACGAGTCATCATCATTGTCAACATCGATATCCTCGGATTTAAGGTACAAATGTTGTTTTCTTTGGATGGATATTTCGTTTCCTGTGTTGTCGGAATATTTGCTGAAACGAGTCGATGATATGTTTGACTCGGGAATGGTGAACGAGTTAGCTGAGTTTTATGAACCGGATGCAGATAACCAAACCGGTTTAAGAAAAGCAATCGGTGTACCCGAGTTCGACCGGTTTTTTAAACAATATCCACCACAGGTTGGACCAGATGAATCTGAACGTCATAATCCAATGCGGGAAGGTGCATATATTGAAGCAGTGAAGGCGATTAAAGATAACACGTGTCAGTTAGCTAAGAGACAGATAGGGAAGATCTTACGGTTAAAAAGAGCTGGGTGGGACCTACAACGGATTGATGCCACGGAGGCGTTTAGGGCGGTGCTGACGTCAGAGTCTAACGGCGGTGGAGAAGAATTTACCGGTGTATGGAAAAAACAAGTATTGGAACCAAGCGTGAAGATTGTGAAGCGTTTCTTGATGGAGTAG 1086 0.4632 MPTTTTTPSFLSPPHSQRHYHKPIQFHHYSHTLFTPSSSSATHTRRRPHCPRMEISPSRHRRKDKVLIIVGATGSGKSRLSVELATLFPYSEIINSDKIQVYRGLDITTNKIPFHQRNNVPHHLLGDIDPSHGEFSPSDFRRHAGDIISDITSRRKLPIIVGGSNSFIHALLVERFDPESNVFDESSSLSTSISSDLRYKCCFLWMDISFPVLSEYLLKRVDDMFDSGMVNELAEFYEPDADNQTGLRKAIGVPEFDRFFKQYPPQVGPDESERHNPMREGAYIEAVKAIKDNTCQLAKRQIGKILRLKRAGWDLQRIDATEAFRAVLTSESNGGGEEFTGVWKKQVLEPSVKIVKRFLME* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4200 361 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 51 360 IPR039657 -
Mtr1g4200 361 Pfam IPP transferase 194 302 - -
Mtr1g4200 361 Pfam IPP transferase 100 176 - -
Mtr1g4200 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 243 IPR027417 -
Mtr1g4200 361 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 4-RELATED 51 360 - -
Mtr1g4200 361 Gene3D - 63 359 IPR027417 -
Mtr1g4200 361 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 210 315 - -
Mtr1g4200 361 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4200 Mtr-Chr1 53598973 53601132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4200 198 359 C2H2 Transcription Factor Family AT2G27760 31.868 1.63e-16 78.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4200 1 53598973 53601132 Mtr1g4200 1 53598973 53601132 ECH