Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4194 ATGATGAACACCACTAGAACATTAGCTATGTCCACAACTACAAAGAAAGAGTTTGGTAATTCTAAAGAAGAAAATGAGCTGAGAAGAGGACCTTGGACTCTTGAAGAAGATAGCTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTAAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGTTGAATTACTTGAAACCTGACATTAAGAGAGGGAACCTTACACCACAAGAACAATTGTTGATCCTTGAACTTCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATTTACCAGGAAGAACAGATAATGAGATAAAGAACTATTGGAGAACAAGGGTGCAAAAACAAGCACGCCAACTTAACATTGAATCTGGTAGCAAGAGATTCATTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTGCTTCAAAAAATGGAACAGAACACTTCTCCAAGCTTTGATAACTCTTCTTCTATGACAAATATGAATAATTTTGGAAATTCTATTGAAGCTTCAACTAGTAATAGCTTCAATATTCCTTCTATGTCTCCATCATCCTATCCACAGAGAGGATTCATAGATGCTTCAAATGGAAATCATTTAAGTACTATGTCAACCAGCTTCAACAATCCTTCTTTGGATTTCTTCCAATTTTCACAGCCACTTGAAAACTCAAAAAGTGCTCCAAATGTGTTTGAGAACAATTTCTATAATGGCCCAATCCAAGACAATTTCTGCATTGATGATACCAATAACTATGGCTTGGAAGGTCTAAACCTTGATCCAATGTCTTCAATGGAAACTTATGACTTTTCACAGTTTGATTTACAAACTACAGAAAGTGGTTGGATGTTAGACAACATGGCTAATACTTTGTGGAACATGGATTCTATGTGA 939 0.3674 MMNTTRTLAMSTTTKKEFGNSKEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNTSPSFDNSSSMTNMNNFGNSIEASTSNSFNIPSMSPSSYPQRGFIDASNGNHLSTMSTSFNNPSLDFFQFSQPLENSKSAPNVFENNFYNGPIQDNFCIDDTNNYGLEGLNLDPMSSMETYDFSQFDLQTTESGWMLDNMANTLWNMDSM* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4194 312 CDD SANT 86 125 IPR001005 -
Mtr1g4194 312 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Mtr1g4194 312 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 44 53 IPR001345 GO:0003824
Mtr1g4194 312 MobiDBLite consensus disorder prediction 1 16 - -
Mtr1g4194 312 Gene3D - 26 82 - -
Mtr1g4194 312 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 10 311 - -
Mtr1g4194 312 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Mtr1g4194 312 CDD SANT 31 76 IPR001005 -
Mtr1g4194 312 MobiDBLite consensus disorder prediction 1 24 - -
Mtr1g4194 312 SMART sant 28 78 IPR001005 -
Mtr1g4194 312 SMART sant 81 129 IPR001005 -
Mtr1g4194 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Mtr1g4194 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Mtr1g4194 312 Gene3D - 85 127 - -
Mtr1g4194 312 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Mtr1g4194 312 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Mtr1g4194 312 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Mtr1g4194 312 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 311 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4194 Mtr-Chr1 53537954 53539423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4194 24 164 MYB Transcription Factor Family AT1G68320 83.688 2.50e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g4194 Myb_DNA-binding 3.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4194 1 53537954 53539423 Mtr1g4194 1 53537954 53539423 ECH