Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4187 ATGGATAACAACCACCATGATCATTACAATACTAAAACAACAAACCCAACTTCCCAAACACACCTTAAGCTCTTTGGTTTCAGCTTCCATGAAGATGAAACCATGCATGATATTCAAGACTCAACAACAACAACAACCAAAACAACTTCTTCTTCCACCTCAACTTCACCATCAAGATCACCGGACTCCTCTGGTATCAACGAAACTTTCCCACCTTCCTCCGGTGAAAGAAAATACGAGTGCCAATATTGTTGCAGAGAGTTTGCAAATTCACAAGCCCTTGGCGGACACCAAAACGCTCACAAAAAAGAACGTCAACAACTCAAACGTGCTCAGTTACAAGCTAACCGAAACGCCGCCGTGTCTTTCGTTCGAAACCCTATCATCTCCGCCTTTGCTCCTCCACAACACTTGCTAGCTCCGCCAGGTTCCATGATGGTTCCAGCTTCCCCTTCCTCCTGGGTTTACGTTCCGCCACGTTCCGCTCCTCCTCCGTTCCACGTCTCAGTTTCACACGGTTGCGTTTTCCCGTCGGGAAACGGAAACACCATGATGAGTAGTAGTAGTAGTAATAATAATAGTAATATGGTGAAACCTGTGGGTGCAGGGATGTTTCCATGTGTTGGCGTTGTAGGGGATTCAACGTCCACATTGTCAACGATGCAGGTTCAGGCCCGGGCCCACCATGGGCCATGTTTGAGTAGGTTCTCAAAAGGTGATAGTGGGCCCAATTTTGATGATGCATTGGGCTTAGATTTGCACCTTAGTCTTGCGCCAGCTGCAAATCGATCACGTGGCTCGGCTCAGCTTGGTTATTCTAGATGCTCCCCTTAA 834 0.4736 MDNNHHDHYNTKTTNPTSQTHLKLFGFSFHEDETMHDIQDSTTTTTKTTSSSTSTSPSRSPDSSGINETFPPSSGERKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQANRNAAVSFVRNPIISAFAPPQHLLAPPGSMMVPASPSSWVYVPPRSAPPPFHVSVSHGCVFPSGNGNTMMSSSSSNNNSNMVKPVGAGMFPCVGVVGDSTSTLSTMQVQARAHHGPCLSRFSKGDSGPNFDDALGLDLHLSLAPAANRSRGSAQLGYSRCSP* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4187 277 SUPERFAMILY beta-beta-alpha zinc fingers 75 106 IPR036236 -
Mtr1g4187 277 MobiDBLite consensus disorder prediction 39 71 - -
Mtr1g4187 277 PANTHER ZINC FINGER PROTEIN 5 12 261 IPR044299 GO:0010090
Mtr1g4187 277 PANTHER ZINC FINGER PROTEIN GIS3 12 261 - -
Mtr1g4187 277 MobiDBLite consensus disorder prediction 37 75 - -
Mtr1g4187 277 Gene3D Classic Zinc Finger 62 126 - -
Mtr1g4187 277 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Mtr1g4187 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4187 Mtr-Chr1 53463988 53465058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4187 14 262 C2H2 Transcription Factor Family AT1G68360 45.185 8.07e-50 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4187 1 53463988 53465058 Mtr1g4187 1 53463988 53465058 ECH