Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4186 ATGGATCAAAAAATGGAAGGAACGTCTGCACCAGCAATTCGACGTGACCCTTACGAAGTTTTAGGCGTTTCGAAGGAATCATCCGATCAGGAAATTAAAACCGCTTACAGAAAACTTGCTCTCAAGTATCACCCTGACAAGAATGCCAACAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCCGACCCAGAAAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACTATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCAATCAAGACTACCATTTCGGCTAATGTTCTTGAAGAAGCTTTGAATGGCACTGTTACAGTCAGACCCCTTCCAATGGGAACATCTGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCACTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCCGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGGGGCTATGGTTTAGCATTGCAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACCGTGAATGCGTTAGCGATGGCTAAGGATCCTGAGGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTTCGGAACTAAAGCCTGGCACACATATATTTGCCGTTTATGGCGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAATCACATGAAGATACCACCCAAAAACTTCAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGGCAATTCGAATCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTGGATGAGCTTCTGAAACAAAGGGACGGTATCCATTCTACCTTCACCATTGTCAAGCCAACCAGTACTAGTGGAAGTGGCAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATAGTAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTCAATCTTAAGGGCTCGGGTTCTGATAAGAAGTTGATTTAA 1245 0.4161 MDQKMEGTSAPAIRRDPYEVLGVSKESSDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPMGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSTFTIVKPTSTSGSGSNLSNGSSSKISGEDSKGESPGEDGGSDSKDKSGKKKWFNLNLKGSGSDKKLI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4186 414 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Mtr1g4186 414 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 3 412 - -
Mtr1g4186 414 MobiDBLite consensus disorder prediction 350 376 - -
Mtr1g4186 414 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 3 412 - -
Mtr1g4186 414 Pfam DnaJ domain 16 78 IPR001623 -
Mtr1g4186 414 CDD DnaJ 16 70 IPR001623 -
Mtr1g4186 414 SUPERFAMILY Chaperone J-domain 15 86 IPR036869 -
Mtr1g4186 414 Coils Coil 286 341 - -
Mtr1g4186 414 PRINTS DnaJ domain signature 18 36 IPR001623 -
Mtr1g4186 414 PRINTS DnaJ domain signature 36 51 IPR001623 -
Mtr1g4186 414 PRINTS DnaJ domain signature 53 73 IPR001623 -
Mtr1g4186 414 PRINTS DnaJ domain signature 73 92 IPR001623 -
Mtr1g4186 414 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Mtr1g4186 414 MobiDBLite consensus disorder prediction 350 414 - -
Mtr1g4186 414 MobiDBLite consensus disorder prediction 377 399 - -
Mtr1g4186 414 Gene3D DnaJ domain 3 98 IPR036869 -
Mtr1g4186 414 SMART dnaj_3 15 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4186 Mtr-Chr1 53443803 53449247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4186 7 88 C2H2 Transcription Factor Family AT1G74250 44.828 1.21e-14 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4186 1 53443803 53449247 Mtr1g4186 1 53443803 53449247 ECH