Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4179 ATGGCCTCCGGTGAAGGGAGGCGGCATCATCATGATCTTGTGCCTCTTGCTGCATTGCTTAAGAGAGAGATGAAAAGTGAGAAGATGGAGAAGCCTACTGTAAGAATTGGTCAAGCTGCCCAATCTAAGAAAGGGGAGGATTACTTTTTAATTAAGATTGATTGTCAGCGCGTTCCCGGGAACTCTTCAACGTCGTTTTCTGTATTCGCGATCTTTGATGGACACAATGGAAATGCTGCTGCTGTTTATACTAAGGAAAATTTGCTAAATCATGTGTTGTGTGCTCTTCCTCGAGGGCTTGGGCGAGACGAGTGGTTGCAAGCTTTACCTAGGGCATTGGTTGCTGGATTTGTCAAGACTGATAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACGTTTGTGATAGTTGATCGGTGGACTGTGACAGTTGCATCAGTTGGAGATTCTCGTTGTATACTTGATACCCAGGGTGGTGCTGTGACCACCTTAACAGTTGACCATAGACTAGAAGAGAATATTGAAGAGAGGGAACGTGTTACTGCAAGTGGAGGTGAAGTTGGTAGGCTTAGCATTGTCGGAGGTGCTGAGATTGGTCCCCTTCGATGCTGGCCAGGAGGTCTATGCCTTTCAAGGTCAATAGGAGACATGGATGTTGGAGAGTTTATAGTTCCAATACCTTATGTCAAACAAGTGAAGCTATCAAAAGCTGGTGGCAGACTTATAATTGCTTCTGATGGAATATGGGATGCTGTATCATCAGAACTGGCAGCAAAATCTTGCCGTGGTTTGCCTGCCGAACTTGCTGCGATGCAGGTTGTCAAGGAAGCCCTAAGAACAAGAGGGTTAAAGGATGATACAACATGTATAGTAGTTGACATAATCCCACCTGATAACGAATTGCCACCAACACCTCCCCCAAAAAAGCGGAATAAGCTGAAAGATTTTTTTTCGTTCAAGAAAAGGTCCCGTGATACTGCTGGTAAGCTGTCGAAGAAGCTTTCGGCTATAAATATAGTGGAAGAATTGTTTGAAGAAGGATCAGCAATGCTTGCTGAAAGATTAGGAAATGATGAAAACTCGGGGCAATCAACATCTGGTCTTTTTGTCTGTGCTGTATGCCAACTTGATCTTGCTCCAAGTGAGGGCATATCCGTCCACGCAGGTTCAATTTTCTCCACAAGTTCGAAGCCATGGCAAGGTCCTTTTCTATGTTGTGATTGTCGCGATAAGAAGGATGCAATGGAAGGAAAACGGCCTAGTGGAGTTAAAGTGTCATAG 1290 0.4473 MASGEGRRHHHDLVPLAALLKREMKSEKMEKPTVRIGQAAQSKKGEDYFLIKIDCQRVPGNSSTSFSVFAIFDGHNGNAAAVYTKENLLNHVLCALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTTLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDAVSSELAAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPKKRNKLKDFFSFKKRSRDTAGKLSKKLSAINIVEELFEEGSAMLAERLGNDENSGQSTSGLFVCAVCQLDLAPSEGISVHAGSIFSTSSKPWQGPFLCCDCRDKKDAMEGKRPSGVKVS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4179 429 SUPERFAMILY PP2C-like 41 297 IPR036457 -
Mtr1g4179 429 CDD PP2Cc 43 297 IPR001932 -
Mtr1g4179 429 Pfam Protein phosphatase 2C 61 269 IPR001932 -
Mtr1g4179 429 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 2 428 - -
Mtr1g4179 429 SMART PP2C_SIG_2 51 297 IPR001932 -
Mtr1g4179 429 PANTHER ALPHABET, ISOFORM E-RELATED 2 428 - -
Mtr1g4179 429 SMART PP2C_4 25 295 IPR001932 -
Mtr1g4179 429 Gene3D - 36 301 IPR036457 -
Mtr1g4179 429 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4179 Mtr-Chr1 53394325 53398469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4179 1 428 PP2C-type Phosphatase Gene Family AT1G68410 79.817 0.0 695
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4179 1 53394325 53398469 Mtr1g4179 1 53394325 53398469 ECH