Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4177 ATGGCTTTAGTTTATGTTTTACATTTTAGGTTCCTTTTGTTCTCTCATTTGACTGTGTTACTGCTACTTGTCTTAACTAGGAAAGGAAATGGACACAGTGGTGATTGTCCAGACTCATTTGGTTGTGGAAATCTTGGGTTTTTTAAATACCCTTTTACAACAGTTGAATTCCCAAGCTGTGGTGCATTGGCAATTCAAGGTTGTGATAATCTCAACAAAACTGCTATGAAGTATGTCCAGTTAACCAAAAGAGGAAAACTCTTCCAAGTTAAAAAGATTGATAATCACTGGTCCATTGGCAACACTATTTCCATTATTGACCCCAATATCACCAAGCTTTTGGAGAAAAATGCTTGTGAGGCATTCAGCTATGTTAATATTACCCTCCCTCCTCCCACTCCTTTTGGAACTTTTTTTATGAAAAACTACATAACAGCTTTCAAATGCAACCATACCCGAAAATTAGGCATTCACCCTCCAAGTAATTTCTTCATAAATAGTTCTTGTCATCCCTATGATTTTTACTTTGGCGATTCAATATTTGATGATGAGTCCAACCACTCTTTCGTGTCCTGTTCGTCATTGCATCTTCCTGTCAATGAATTAGGCTTTGCACTTTCCGGTAACCCATTTCCCTTTTTAACTAATGAAATTACCTTTCAGTTCCAATCTTCATATGACTGTCAACAGTGTCATAACCATTACCATGATAAAAAAAATCATTGTCATGTTGACAGCAACGGACAAATTTATTGCGTCGCAAGGAAGGGTAGAAGTCCAGCTCGGAAGCTAGGATTGGTTTTAGGAGTCGGTGTTGGACCATGGATCATAGTTGGATTATTCCTCGCGCTACGGCACTACAAACGAAAATCTGGCCCTGCACAGACCCAATCCCAACCAAGCAACAACACTTATGTTGATCCTTATTTGAATCGTGAAGTGGAGTCAACCAAGCTCTTCTTTGGTGTACCTGTCTTCTCCTATGAAGAACTTCAACAAGCAACAAATAATTTTGACCGCAGGAGAAAGCTAGGAGTTGGAGGTTTTGGCAGTGTTTACCATGGGAAGCTCAAAGATGGAAGGGAGGTTGCTGTGAAACACTTATTTGAGCAAAATTACAGGAGAGTAGAACAGTTTGTGAATGAAATTGAAGTACTCGCTCGCTTGCGCCATAGGAATCTAGTGTCCCTCTATGGCTGCACTTCACGTCACAGCCGTGAGCTACTACTTGTATATGAATATGTTCCAAATGGAACTGTGGCTAGCCATCTCCATGGTGATTTAGCTAGAGCCGGTTTGCTGACATGGCTTATTCGAATGCAAATCGCAATAGAAACCGCTTCTGCATTGGCTTATCTACATGCTTCCGACATCATTCACCGTGATGTCAAAACCACCAACATTCTACTTGACATTAATTTTTCTGTTAAGTTAGCAGATTTTGGACTATCAAGGTTGTTCCCTAGCGATGTCAGCCATGTTTCCACAGCTCCACAAGGAAGTCCGGGTTACCTTGACCCTGAATACTTCCAACTCTACAAGCTATCGGAGAAGAGTGATGTGTATAGCTTTGGCGTTGTGCTCATCGAGCTAATATCATCTATGACAGTAATTGATTCTGCCAGAGAAAGAGAGGAAGTTAACTTGGCAAATCTAGCAGCTAAGAAGATCCGAAATGGTGCAGTCGGGGAATTGGTTGACCCATCACTTGGTTTTGAATCAGACAGTGAAGTTAACAGGATGGTAACTTCAGTGGCAGAATTGGCTTTTCAATGTGTGCTAGGAGACATGGAATTAAGACCTTCCATGGATGAAGTTCTGCAAGAACTCAAGAAAATTGATGGTGGGAATTTTGAGTTTGATCATCTAGAGAAAGTACATGACAGTGTTGGCTCCTCGCGGTACGAAGAAGTACATTCACCGATAGTTGGAACTTCTATCTATAGGAAGCAAGAAGTATCAACTTCACCAAAGTCATTGACAGAGAAATGGGAAAGTGAATCTATTACGCCCAATGGTGAGAGCATAACAGAGTCTAGGGATGGCGAAGTTGCAGAGATTCAAGCTCTTCGCGACACAATGCGGTGTTGA 2091 0.4118 MALVYVLHFRFLLFSHLTVLLLLVLTRKGNGHSGDCPDSFGCGNLGFFKYPFTTVEFPSCGALAIQGCDNLNKTAMKYVQLTKRGKLFQVKKIDNHWSIGNTISIIDPNITKLLEKNACEAFSYVNITLPPPTPFGTFFMKNYITAFKCNHTRKLGIHPPSNFFINSSCHPYDFYFGDSIFDDESNHSFVSCSSLHLPVNELGFALSGNPFPFLTNEITFQFQSSYDCQQCHNHYHDKKNHCHVDSNGQIYCVARKGRSPARKLGLVLGVGVGPWIIVGLFLALRHYKRKSGPAQTQSQPSNNTYVDPYLNREVESTKLFFGVPVFSYEELQQATNNFDRRRKLGVGGFGSVYHGKLKDGREVAVKHLFEQNYRRVEQFVNEIEVLARLRHRNLVSLYGCTSRHSRELLLVYEYVPNGTVASHLHGDLARAGLLTWLIRMQIAIETASALAYLHASDIIHRDVKTTNILLDINFSVKLADFGLSRLFPSDVSHVSTAPQGSPGYLDPEYFQLYKLSEKSDVYSFGVVLIELISSMTVIDSAREREEVNLANLAAKKIRNGAVGELVDPSLGFESDSEVNRMVTSVAELAFQCVLGDMELRPSMDEVLQELKKIDGGNFEFDHLEKVHDSVGSSRYEEVHSPIVGTSIYRKQEVSTSPKSLTEKWESESITPNGESITESRDGEVAEIQALRDTMRC* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4177 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Mtr1g4177 696 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 20 672 - -
Mtr1g4177 696 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4177 696 SUPERFAMILY Protein kinase-like (PK-like) 317 610 IPR011009 -
Mtr1g4177 696 Pfam Protein kinase domain 339 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4177 696 MobiDBLite consensus disorder prediction 654 678 - -
Mtr1g4177 696 MobiDBLite consensus disorder prediction 654 677 - -
Mtr1g4177 696 Gene3D Phosphorylase Kinase; domain 1 311 414 - -
Mtr1g4177 696 Gene3D Transferase(Phosphotransferase) domain 1 415 618 - -
Mtr1g4177 696 SMART serkin_6 338 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4177 696 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 20 672 IPR044652 -
Mtr1g4177 696 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4177 Mtr-Chr1 53380583 53384061 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4177 36 672 Receptor kinase-like Gene Family AT1G25390 43.712 1.49e-161 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Mtr1g4177 Pkinase 8.4e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4177 1 53380583 53384061 Mtr1g4177 1 53380583 53384061 ECH