Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4164 ATGGACTCAAATTCATCTAGCTTTCTTTTGAACTCTTCAAATTTTCACTCAGTTTTCTATCAGGACAAACATGATGATGGCATAATTGATCTTGGTCTTAGTCTTGGAACTGTTCAACATGATGCTTATCATTCTTCTGCTAACTTGTATGATGATGATCTTATGGATTGGCCTAATATGAAGAATTCTAGATCTGTCCATGAAAACTTTGATGAAGAGATAGAGGGAGTACAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTCTCCATTGGTAGGAAAATTTGTATTCTTGATCATGGAGGATACTCAAGTCTAGCCATTCAATTAGAAGACATGTTTGGTAGCCAATCAGTATCTGGTATAAGATTATTTGAATCTGGATCAGAGTACTCATTATTCTACAAGGACAGTGAAGACAATTGGAGGACTGTTGGTGATGTCCTGTGGAAGGAGTTTGTAGAATGTGTGAAAAGGCTAAGGATTGCAAGAAAGAATGCAGGCAATGTTAACATTTCATCTTAG 537 0.3724 MDSNSSSFLLNSSNFHSVFYQDKHDDGIIDLGLSLGTVQHDAYHSSANLYDDDLMDWPNMKNSRSVHENFDEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHGGYSSLAIQLEDMFGSQSVSGIRLFESGSEYSLFYKDSEDNWRTVGDVLWKEFVECVKRLRIARKNAGNVNISS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4164 178 Gene3D - 77 177 - -
Mtr1g4164 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 171 IPR003311 GO:0005634|GO:0006355
Mtr1g4164 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 171 - -
Mtr1g4164 178 ProSiteProfiles PB1 domain profile. 83 171 IPR000270 GO:0005515
Mtr1g4164 178 Pfam AUX/IAA family 68 169 IPR033389 -
Mtr1g4164 178 SUPERFAMILY CAD & PB1 domains 83 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4164 Mtr-Chr1 53227685 53229510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4164 78 166 B3 DNA Binding Superfamily AT1G19220 35.955 1.66e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mtr1g4164 AUX_IAA 1.6e-20 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4164 1 53227685 53229510 Mtr1g4164 1 53227685 53229510 ECH