Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4162 ATGCATATCGAAGAAGGAGTTGAAGTGAAAAGGGTATTCATTGGAGCAGGATGCAACAGAATAGTGAACAACGTTTCTTGGGGTGCTTCTGGTTTTGTCTCTTTTGGAGCTTCAAACGCCGTCGCCATTTTCTCCCCCAAGAGTGCTCAAATTTTGACCACTCTTCCCGGTCACAAAGCTGTTGTCAATTGCACTCACTGGCTCCCAAGTAGCAAATTTCTATTCAAAGCAAAAGAATTGGAACTGCATTATTTGCTATCTGGAGATGCAGATGGTGCTATTATTCTATGGGAACTGTCCCTTGTTGATGGGAAGTGGAGGCAAGTGTCACAAGTACCACAATCACACAAGAAAGGGGTTACATGCATCAATGGAATTATGATTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGTACTGTTTGTATATGGGAACTTGTATTTCCACTGACGAGTAGTGGTGACTGTAAATTATCATGCCTGGACTCTTTTTCCGTTGGTTCTAAATCTATGGTAGCCTTATCGATGGCGGAACTGCCTGGATGCACTGATCACATCATCCTTGCAATGGGAGGATTGGATAACAAGATCCACCTTTACTGTGGGGGAAGGACTGGAAAGTTTGTACATTCATGTGAGCTAAAAGGGCACACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTGTAAGCATCAATGGGGAGGTAAACAATATTTTTCTGGTAAGTTCGTCTCAAGATAAATGCATACGAATTTGGAAGATGGCATTGTGCAGCTCTGTGCCAAACGGGAATGGCATATACAGGGAGGAAGAATCAAGCTTATCATCCTATATAGAAGGTCCTGTCCTTGTGGCCGGCTCATCTTCTTTTCAGATATCCTTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCGGTTGAATGGCAACCCCCTTTGGTTGCATCCACGGAAGGGGAAGCCTGTTATCAGTCACAGAGCATTTTATCTGCATCCATGGACAAGACTATGATGATCTGGCAGCCTGAAAAGACTTCTGGTGTGTGGATGAATGTGGTTACTGTTGGCGAACTAAGTCACTGTGCTCTGGGATTCTATGGTGGTCATTGGAGTCCAAATGGAGATTCAATTTTAGCACATGGATATGGTGGATCGTTCCATCTTTGGAAAAATGTTGGCGATGACAACTGGCTTACGCAAAAGGTTCCCTCTGGTCATTTTGCATCGGTGACTGAGATAGCATGGGCTAGATCTGGTGACTACATTATATCAGCTAGCCATGACCAGACAACTAGAATTTATGCTCCATGGAAAGTTGAGACTTCTCTTCAAGATGGAGAGTTTTGGTATGAGATTGCGCGGCCTCAGGTTCATGGCCATGATATAAATTGTATGACCGTTGTTCATAGTAAGGGTAATCACCGTTTTGTTGGCGGAGCCGATGAGAAAGTTGCTAGAGTGTTTGAAGCTCCATTATCATTTTTGAAAACGTTGAGTAATGCCACTTTGCAGAAGTCTTGTTATTCTGATGACGACTTGACAAACATTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTTTCACAAAAACCTATTTATGCTCAAGCTGTACATGAGACCTCTGATACAAATGGGGTTGATGGTCTGGACACCTTTGAAACTGTTCCCGATGCAGTTCCAACCGTGTTTACCGAACCTCCAATTGAAGACCAACTAGCATGGCACACACTCTGGCCTGAATCACATAAACTCTATGGCCATGGAAACGAGCTATTTTCTTTATGCTGTGATCATAAGGGTGAGCTTGTCGCTTCTTCATGTAAGGCCCAATCTACGGCTGTGGCAGAGGTATGGCTTTGGCAGGTTGGTTCATGGAAAGCAGTTGGCCGCTTGCAATCCCATAGCTTAACAGTGACACAGATGGAATTCTCACACGATGACAACTTTCTTTTGACTGTCTCAAGAGATCGCCAGTTCTCTGTTTTTACAATCACAACAACAGGAACCGGTGAAATTAGTTATAGTCTTCTTGCGAGGCAGGAGGGACACAAGCGGATTATCTGGTCATGTTCTTGGAACCCACACGGCCATGAATTTGCAACAGGTTCACGCGACAAGACAGTGAAAATCTGGGCCGTAGAGAAGAAATCTTCATCAGTAAGACAGCTTATGACTTTACCTCAATTTACGAGTAGTGTGACTGCATTGTCTTGGGTTGCTCTGCCTAATCGAAGAAATGATGGAATTCTAGCTGTTGGAATGGAAAATGGCCAAATAGAATTGTGGAGTCTGTCCTATAACAGACAAGTGGATGGAAGCATTGTAGTACCGGGTTTTGCTGCTGCTCTTCTTGTTCGCGTAGATCCTTTTATATGTCATGCCTCTACAATAAACCGTCTGGCGTGGAGGAAAACTGAAGAAGATCACAAGAGCCTACAACTTGCTTCTTGTGGAGCTGATAACTGTGTGAGAGTGTTTGATGTAACTGTTTGA 2511 0.4357 MHIEEGVEVKRVFIGAGCNRIVNNVSWGASGFVSFGASNAVAIFSPKSAQILTTLPGHKAVVNCTHWLPSSKFLFKAKELELHYLLSGDADGAIILWELSLVDGKWRQVSQVPQSHKKGVTCINGIMISQTEAMFASTSSDGTVCIWELVFPLTSSGDCKLSCLDSFSVGSKSMVALSMAELPGCTDHIILAMGGLDNKIHLYCGGRTGKFVHSCELKGHTDWIRSLDFSLPVSINGEVNNIFLVSSSQDKCIRIWKMALCSSVPNGNGIYREEESSLSSYIEGPVLVAGSSSFQISLESLLIGHEDWVYSVEWQPPLVASTEGEACYQSQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGDDNWLTQKVPSGHFASVTEIAWARSGDYIISASHDQTTRIYAPWKVETSLQDGEFWYEIARPQVHGHDINCMTVVHSKGNHRFVGGADEKVARVFEAPLSFLKTLSNATLQKSCYSDDDLTNIQILGANMSALGLSQKPIYAQAVHETSDTNGVDGLDTFETVPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSTAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSHDDNFLLTVSRDRQFSVFTITTTGTGEISYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVEKKSSSVRQLMTLPQFTSSVTALSWVALPNRRNDGILAVGMENGQIELWSLSYNRQVDGSIVVPGFAAALLVRVDPFICHASTINRLAWRKTEEDHKSLQLASCGADNCVRVFDVTV* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4162 836 Gene3D - 405 517 IPR015943 GO:0005515
Mtr1g4162 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 439 IPR001680 GO:0005515
Mtr1g4162 836 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 301 773 IPR011047 -
Mtr1g4162 836 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Mtr1g4162 836 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Mtr1g4162 836 PRINTS G protein beta WD-40 repeat signature 705 719 IPR020472 -
Mtr1g4162 836 Gene3D - 8 158 IPR015943 GO:0005515
Mtr1g4162 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 727 IPR001680 GO:0005515
Mtr1g4162 836 PANTHER WD REPEAT-CONTAINING 1 835 - -
Mtr1g4162 836 SUPERFAMILY WD40 repeat-like 32 489 IPR036322 GO:0005515
Mtr1g4162 836 Gene3D - 286 404 IPR015943 GO:0005515
Mtr1g4162 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 720 - -
Mtr1g4162 836 Gene3D - 159 264 IPR015943 GO:0005515
Mtr1g4162 836 Pfam WD domain, G-beta repeat 213 257 IPR001680 GO:0005515
Mtr1g4162 836 Pfam WD domain, G-beta repeat 110 147 IPR001680 GO:0005515
Mtr1g4162 836 Pfam WD domain, G-beta repeat 687 717 IPR001680 GO:0005515
Mtr1g4162 836 Pfam WD domain, G-beta repeat 405 439 IPR001680 GO:0005515
Mtr1g4162 836 Pfam WD domain, G-beta repeat 50 97 IPR001680 GO:0005515
Mtr1g4162 836 Gene3D - 576 677 IPR015943 GO:0005515
Mtr1g4162 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 637 672 IPR001680 GO:0005515
Mtr1g4162 836 PANTHER ELONGATOR COMPLEX PROTEIN 2 1 835 - -
Mtr1g4162 836 Gene3D - 678 836 IPR015943 GO:0005515
Mtr1g4162 836 SMART WD40_4 789 833 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 295 346 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 400 440 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 725 769 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 208 257 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 105 148 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 48 98 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 679 718 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 630 669 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 583 627 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 450 494 IPR001680 GO:0005515
Mtr1g4162 836 SMART WD40_4 356 395 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4162 1 53206447 53212701 Mtr1g4162 1 53206447 53212701 ECH