Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4153 ATGCATAACAAGGACGTTTGTTCTCCGTCATCCAAAAGCGGTTACGGCATCGGCGTCAACAACGCCGGTCACATGCAGTCGAACGCTGGCGTGTTTGCTTCGTTGTACTCTGCTCTGAGTAATGATCTTCCATCATCGCTCGCCGGAAACAGCAGCAACGGCGGCGGATTTTCGCTTTATCCTTACTCTGACCTTGGAACAGAGTACGACTCATGCGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTTTCTCAGTCGCCTTCTGGAAAGTTCCAAAGAGGTCGAAGCTCTGCAGCAGGAAAACGGACAGCTCCGTGCCGTGAACAAAGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAAGCTTCGCTGGAGAACCGATTCAATGGCGGTGGATCCTCCGTCCAGACTCAATCAACTCCGTTTGATGTGTTGCAAGGTTTCCGTGGCTTGAATCTTGGAGATGGAAAGGAAAACTGTGCTGATTGGAATAGCAATAACATCAACAATAACAACAAGGAGTTGCAGGAAGCTTCCGAATCTGATGAGAGTCCGACGAGTGTGATTGAGAATAACGGTGTTGAAACGGAGAGGTTCTCGCTTCCAAAGAGCATTTCTGTTAGATCCAATGGCTACTTGAAGCTTGCTCCGCCTCCGGCCGTCGTAACTAACAACAATGCTTGCCGCACCAAAGGCGCTACTCGCTCCCGCGCTTCCTCCACTCAATCTGATACAGTTCAAAAGGTATTTGTGCGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTCTGTAACAAATGGCAGGAAACTGGCACATGCCCTTATGGAGACCACTGTCAATTCGCTCATGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCTTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTATGTCACAACCTAAGCCCAGATCAATGAAGCTGGAAAGATGA 1074 0.4963 MHNKDVCSPSSKSGYGIGVNNAGHMQSNAGVFASLYSALSNDLPSSLAGNSSNGGGFSLYPYSDLGTEYDSCVIQKHQDMVNRHSMFLSRLLESSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFNGGGSSVQTQSTPFDVLQGFRGLNLGDGKENCADWNSNNINNNNKELQEASESDESPTSVIENNGVETERFSLPKSISVRSNGYLKLAPPPAVVTNNNACRTKGATRSRASSTQSDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAMSQPKPRSMKLER* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4153 357 SUPERFAMILY CCCH zinc finger 270 305 IPR036855 GO:0046872
Mtr1g4153 357 PANTHER CCCH ZINC FINGER/TIS11-RELATED 67 350 IPR045877 GO:0003729
Mtr1g4153 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Mtr1g4153 357 Gene3D - 307 343 - -
Mtr1g4153 357 Gene3D - 268 306 - -
Mtr1g4153 357 SUPERFAMILY CCCH zinc finger 307 341 IPR036855 GO:0046872
Mtr1g4153 357 Coils Coil 91 118 - -
Mtr1g4153 357 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Mtr1g4153 357 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Mtr1g4153 357 MobiDBLite consensus disorder prediction 227 247 - -
Mtr1g4153 357 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Mtr1g4153 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 67 350 - -
Mtr1g4153 357 MobiDBLite consensus disorder prediction 167 198 - -
Mtr1g4153 357 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4153 Mtr-Chr1 53122488 53126408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4153 62 352 C3H Transcription Factor Family AT1G68200 49.153 3.21e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr1g4153 zf-CCCH 2.9e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4153 1 53122488 53126408 Mtr1g4153 1 53122488 53126408 ECH