Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4149 ATGAGCATAGTTCATCATCTTGTTTTTCACAGTTCATTCTTCCGTCACACTGACACACAAACACACGCACACATAGAATCGTCTCATCACAACAATATCCAGCACGACGCCGTTTTACCGAACCTTGCATTGCATGCTTCCAACTCCATCATCATCATCATTTCCCAAAAAACCCTAAACCTCTCATTTCATCATCTCGCCATGAAGGACCGCCCTTCGCTGTCCTCCCATGGCGCCATCTATGTTCCTCCTCACCATCGTCTCCGCTCCGTCGTTACCTCCGCCTCCCCCGCTCCCATTTCCGTCAAACTCAGCCAAAATCAACCACCGCCACCTACCACTCTCCAAACCCCCTTATCCAACAACAATGCAAATTCTCGCTTCGTTTCTGCTTACGACGACGTCATTTCCGAGGATTGCTCCAACCATCAACTTCACGTTCCTTCCCTACCGAGTGGTTACCTCAATGATAACATGAATGAATGGAAGAGGAAATTAATGATGCTGTTGAATGATAAGAGTAAGCAAGAGGTGATTTCGAGGGAGAAAAAAGACAGGCGTGATTTTGACGACATTGCAGTTTTGGCAACTAGAATGGGACTGTATAGCCATAAGTATTCGAAGGTTGTTGTCTTTAGTAAGGCGCCACTTCCAAATTACAGATATGATTTGGACGAAAGACGGCCTCAGAGAGAGGTGAGCATGCCTCTCACCGTAAGCAAGCGGGTTGGTGCATATTTTGAGGAATACCTTAGCCAAAAGTCTAGGGTAAAGAAAAGCTTTTCAGATTCGTCGTTTGCAAGATCAAGCAGTGATGGCAGTCTTGGTACAGATGAAGGGTTTTTTGTGCAACCTGAGCCACTAGCATCCAGTAAGTCTGTTGTGGAGAAAATTGCCCGGCAGATAAGCTTTCAAATGCGTGATCAACAACAAGCCTGGCAGGAATCACCTGAAGGAAGAAAAATGCTAGAATTTCGTAGCAATCTCCCTGCTTATAAAGAGAAAGAAGCAATATTATCAGTCATATCAAAGAATCAGGTAGTCATCATTTCAGGTGAAACAGGTTGTGGCAAGACAACACAAATTCCACAATTTATTTTAGAGTCTGAGATAGAATCAGTTCATGGAGCTGCTTGTAATATTATATGCACACAGCCAAGACGAATTTCAGCCATGTCTGTTTCGGAAAGGGTTGCTTTTGAGAGAGGGGAGAAATTGGGCGAATCTGTTGGATATAAAGTTCGACTGGAGGGAATGAAAGGGAAGGATACCCATCTTCTCTTTTGCACTACGGGCATCTTATTAAGAAGATTACTGGCTGATAGAAACCTCAAAGGCGTAACTCATGTTATTGTGGATGAAATTCATGAACGTGGGATGAATGAAGATTTTCTGCTTATTGTCCTTAAAGAACTCCTTCCCCATCGGCCCGAACTCAAACTGATTTTGATGAGTGCTACCCTAGATGCAGAGCTCTTCTCTTTGTACTTTAATGGGGCTCCAATAGTGAACATACTGGGCTTTACACACCCTGTTAGAACTCTTTTTTTGGAGAACATTCTTGAAATCACGGGCTATCGATTGACTCCTTCTAATCAAATTGATGATTATGGTCAAGAAAGGGCTTGGAAAATGAACAAACAGGCCCCAAGAAAGAGGAAAAGCCAAATTGCTTCTGCTGTAGAGGATGCTATTAGATCTGCTGACTTCAGAGAGTACAGCCTTCAGACACAGGAGTCTTTGTCATGCTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAATATATCCTGTGTGATATTTGTGAGAATAAAAGGCCTGGTGCTGTTTTGGTTTTCATGACTGGGTGGGATGATATAAGCTCTCTGAAAGAGAAGCTCCAAACACATTATGTCTTAGGAGATCCGAAGCGTGTTTTGTTGCTTACATGTCATGGCTCAATGGCTAGCTCAGAGCAAAAGTTAATATTTGAAGAGCCTGAAGATGGAGTAAGAAAAGTAGTGCTAGCAACAAATATTGCTGAAACGAGTATCACAGTAGATGATGTTGTTTTTGTTCTGGACTGTGGAAAAGCAAAAGAAACATCATATGATGCACTGAATAACACACCTTGTTTGCTTCCTACATGGATCTCTAAGGCTTCTGCTCATCAAAGAAGAGGAAGAGCCGGTCGTGTCCAACCTGGGGAGTGTTACCATCTTTATCCTAGATGTGTATATGATGCTTTTGCAGAGTATCAATTGCCAGAAATTTTGAGAACACCTTTGCAGTCTCTCTGTTTACAAATCAAAAGTCTAAGACTTGGAAGTATATCTGATTTCTTGTCCAGGGCTTTGCAGTCTCCTGAGATACTGGCGGTACAAAATGCAGTTGAATATTTAAAAATAATTGGGGCTTTGGATGAGAGTGAGAATCTGACTACTCTAGGAAGCTATTTGACAATGCTTCCTATGGAACCCAAACTTGGAAAGATGCTTATATTAGGGGCTATCTTCAATTGCTTGGATCCTATATTAACTGTTGTTGCTGGACTTAGCGTAAGAGATCCTTTTCTTTCACCACTGGATAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATATACGGGTGCATACAGTGACCACCTAGCACTTGTACGTGCCTATGCGGGTTGGAAAGAGGCTGAGATTGACCTGGTTGGATATGAATATTGCTGGAAAAACTTTCTGTCATTCCAATCCATGAAGGCTATTGATGCTCTTCGGAGGGAATTCATAGGGCTGCTTACGGATATTGGATTAGTTGATAGCAACACAACCAGCTGTGACACATGGAGCTATGATGTGAATCTTATCCGGGCAGTTATTTGCTATGGTCTATACCCTGGAATTTGTTCTGTGGTGCATAATGAGAAGTCATTTGCTTTGAAAACAATGGAGGATGGTCAAGTTCTCTTGTACTCGAATTCGGTCAATGCTCGAGAAACAAGAATTCCATATCCGTGGTTAGTTTTTAATGAGAAGATAAAAGTGAACTCCGTTTTTCTCCGTGACTCAACAGCTGTCTCTGATTCAATGATGCTTTTGTTTGGTGGAAGCTTATCAAAAGGAGATGCTGATAATCATTTAAAAATGTTAGGAGGATATCTGGAGTTTTTCATGGAACCTACTGTTGCTGATATGTATCAAAGTATAAGGAGAGAACTTGATGACTTCATTCAGAGCAAACTGCTTTCTCCAAGAATGAGCGTACACTCGCATCATAACCTCCTATCTGCGGTACGTTTTCTGATTTCCCACGACTCATGTGAAGGAAGATTTGTATTTGGTCGTCAGGTCCTTAAACCATCAAATATATCTGTGATGGCCCCACACCCAGCATCCTTGGTTCCAAGAACAGAGAGTGGACCTGGGGGTGATAATTCTAAAAGTCAGCTCCAAACTTTGCTTACAAGAGCAGGATATGCTGCTCCTGTCTACAAGACTAAACAGTTGAAGAACAACCAGTTTCGGGCCACAGTTGAGTTCAATGGAGTGGAGATAATGGGCCAACCTTGCAGCAATAAGAAGAGTGCAGAGAAAGATGCCGCAGCTGAAGCTCTGCAATGGTTGATGGGCAAGCAAGCTGGCTGTGAGTATATCGATCACATGTCAATGTTTCTCAAAAAAAGTAAGAAGGATCACAATTAA 3669 0.4227 MSIVHHLVFHSSFFRHTDTQTHAHIESSHHNNIQHDAVLPNLALHASNSIIIIISQKTLNLSFHHLAMKDRPSLSSHGAIYVPPHHRLRSVVTSASPAPISVKLSQNQPPPPTTLQTPLSNNNANSRFVSAYDDVISEDCSNHQLHVPSLPSGYLNDNMNEWKRKLMMLLNDKSKQEVISREKKDRRDFDDIAVLATRMGLYSHKYSKVVVFSKAPLPNYRYDLDERRPQREVSMPLTVSKRVGAYFEEYLSQKSRVKKSFSDSSFARSSSDGSLGTDEGFFVQPEPLASSKSVVEKIARQISFQMRDQQQAWQESPEGRKMLEFRSNLPAYKEKEAILSVISKNQVVIISGETGCGKTTQIPQFILESEIESVHGAACNIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGKDTHLLFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPHRPELKLILMSATLDAELFSLYFNGAPIVNILGFTHPVRTLFLENILEITGYRLTPSNQIDDYGQERAWKMNKQAPRKRKSQIASAVEDAIRSADFREYSLQTQESLSCWNPDCIGFSLIEYILCDICENKRPGAVLVFMTGWDDISSLKEKLQTHYVLGDPKRVLLLTCHGSMASSEQKLIFEEPEDGVRKVVLATNIAETSITVDDVVFVLDCGKAKETSYDALNNTPCLLPTWISKASAHQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISDFLSRALQSPEILAVQNAVEYLKIIGALDESENLTTLGSYLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLSPLDKKDLAEAAKSQYTGAYSDHLALVRAYAGWKEAEIDLVGYEYCWKNFLSFQSMKAIDALRREFIGLLTDIGLVDSNTTSCDTWSYDVNLIRAVICYGLYPGICSVVHNEKSFALKTMEDGQVLLYSNSVNARETRIPYPWLVFNEKIKVNSVFLRDSTAVSDSMMLLFGGSLSKGDADNHLKMLGGYLEFFMEPTVADMYQSIRRELDDFIQSKLLSPRMSVHSHHNLLSAVRFLISHDSCEGRFVFGRQVLKPSNISVMAPHPASLVPRTESGPGGDNSKSQLQTLLTRAGYAAPVYKTKQLKNNQFRATVEFNGVEIMGQPCSNKKSAEKDAAAEALQWLMGKQAGCEYIDHMSMFLKKSKKDHN* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4149 1222 Gene3D - 286 507 IPR027417 -
Mtr1g4149 1222 SMART ha2_5 789 879 IPR007502 GO:0004386
Mtr1g4149 1222 Gene3D - 769 873 - -
Mtr1g4149 1222 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 116 1148 - -
Mtr1g4149 1222 SMART helicmild6 621 727 IPR001650 -
Mtr1g4149 1222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 593 767 IPR001650 -
Mtr1g4149 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 887 IPR027417 -
Mtr1g4149 1222 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 945 1026 IPR011709 -
Mtr1g4149 1222 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1134 1199 IPR014720 -
Mtr1g4149 1222 SMART ultradead3 327 523 IPR014001 -
Mtr1g4149 1222 CDD SF2_C_RHA 576 735 - -
Mtr1g4149 1222 SUPERFAMILY dsRNA-binding domain-like 1129 1197 - -
Mtr1g4149 1222 SMART DRBM_3 1135 1198 IPR014720 -
Mtr1g4149 1222 CDD DEXHc_RHA-like 345 505 - -
Mtr1g4149 1222 Pfam Helicase associated domain (HA2) 790 863 IPR007502 GO:0004386
Mtr1g4149 1222 Gene3D - 592 746 IPR027417 -
Mtr1g4149 1222 Gene3D - 1121 1202 - -
Mtr1g4149 1222 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 506 IPR014001 -
Mtr1g4149 1222 Pfam DEAD/DEAH box helicase 337 490 IPR011545 GO:0003676|GO:0005524
Mtr1g4149 1222 Pfam Helicase conserved C-terminal domain 597 726 IPR001650 -
Mtr1g4149 1222 Pfam Double-stranded RNA binding motif 1135 1197 IPR014720 -
Mtr1g4149 1222 MobiDBLite consensus disorder prediction 101 122 - -
Mtr1g4149 1222 PANTHER ATP-DEPENDENT RNA HELICASE 116 1148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4149 Mtr-Chr1 53032806 53049622 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4149 1 53032806 53049622 Mtr1g4149 1 53032806 53049622 ECH