Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4127 ATGGCCGCGTCGCAGTCATCCTCCGCCGTAGGCAACACCAACATCATGCTCGCAATCTTCGAGAAGAAAACAAACACCGTAGATCTCTACCGTCCCCTCCGCAACTACATCGCCTTCCATTACTCTGAACGCGAAGCACAAAACCTCGAAGACGATCTTCAAACCCTAAAACAACTCCGTTCCGACCTCGAACGTCACTCGGATCCATCTCTACCCGCACGACGTGACCTTTTCATAACTTATTTCAAAGCTCTATGTCAAACCGAAACTCGATTTCCGATTTCATCTGAACCTGATCACGTTAACGCACTCACCTTCGTTTGGTTCGATGCGTTCAAACCGAAGCAAAAAGCTTCTCAGCAAAATATTCATCTTGAGAAAGGCGCTGTGTTGTTCAATTTGGCCGCTGTTTATAGTCAGATTGGTTTAACATTTGATCGGAATACAGTTGACGGCCGGCGGCAGGCTTCTCATGCGTTTATGGCGGCGGCAGGCTCGTTCGGTTTTCTTAGAGAGAATGCTTCTATGAAAATCTCCGTTGGAAGTTCCACCACTCTTGATTTGTCCGTTGAGTGTGCTGGAATGTTAGAGAAGCTTATGCTTGCTCAGGCTCAGGAGTGTGTGTTTGAAAACACTATTGCAAAAGGAAGTACTCCTGGTGTTTGTGCTAAGATCTCTAGGCAGGTTGGGCTGTATTACGAGGAAGCATTGGCTGCACTGAATGTTGCGCCTTTAAGTCAGCATTTCGATAAGTCTTGGATAGTTCATGTGCAATTGAAGACAGCTATTTTCTATGCTGAAGCTTGTTATAGATATGGACTAGAGCTGCATGAGAAAGAGGAAATAGCGGAGGAGATTGCGCGGTTGAAGAGTGCTGTTAGTGTGCTTACTGAGGCGAAGAAAAACTCCAGGGGCGCTGCAGCACAGCTTCTTGATGCCATTAACAAGTTAGAGGTTAATATTAACAGAAACCTTGAAAGGGCTGTCAAGGAGAATGATAGAGTTTACTTGATGAGAGTTCCTCCTGCTAGTTCATTGTCACCTCTTCCGGCCTTTGCTATGGTGAAGCCGATGGTCATGAGTGAGGTGCTGGATGCGAGTAAAGAGAAGATGTTCGCAAGTCTTGTTCCTGACAATAGTGCCAAGGCTCTCTCCAGGTACACTGAAATGGTTGATGGCATTATAAGAACACAGGCTGAGAAGTTGCAGCAAGCTAGTGAGCTAACCCGAGTTAGGCTTAGGGAAATGGAATTGCCGGATTCTATTCTTGCTCTGGAAGGAAATTTTACTCTACCCACAAATCTCAAAGAAGATGTGGAGGCTGTCCAGATTAGTGGGGGGCCTGCTGGTTTGGAATCAGAGTTGCAGCAGCTTAAGGACCTAAGGAGGGTTAATCAAGAACTGCTGGTCCAGACCGAGGAGTTGTTGCAGAAGGAATCAAGAGAAGATGCTCAATTTAGAAGTCAATTCGGCACTAAGTGGACTAGGCCTCAGTCAAGCACTCTGACAAAGAATTTGTTGGATAGACTGAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGAGAGTGATGCTAGGATTGAGCGTTCAGTTAGAGAACATGCAGCACTGATGGCCATCCTTGATGCCCGTCCGATTGAATCTGCACTTCCAAGTTTGGCAAGGCCAATTATGTCTTTTGATCAAAATGAAGATGCTATTGTAGGGTCCCTCAAACAAAGCTTGAGGCAACTAGAAACTCTAGGAGCTCAAAGGGCTGGTCTTGAAGACATGCTTAGAGAGATGAAAAGAAAGGATGATATATTGCCCAAGTTGATGACATCCACCGGTTCTTATGAGGATCTTTTTAAAAAGGAGATAGCAAAATATGACCATATTTCTGAAGACATAGCTCAGAATATTGAGGCACAAGAACAACTCTTGCTGCAAATCCAGGCTCAAAATGATGATTTTTCTGTTATCTTCAATCTTGAAGATTACAAAGCTTCACGTGAAAAATCCTACAAGCAGATTGAAGCTGCCATAGCAAAGTTTCGAGAAATAAAGGACAACATCAATGAAGGGTTAAAATTCTATGTTACCCTGCAGGATGCAATCACAAATGTAAAGCAGCAGAGCAATGACTTTGTAATGACAAGGAACATCCAGTGCAGGGAAATGATTGAAGATGTTCAGAGACAAGTAGCTGGTCTGAGCTTCCAGGATAAAAACACAGGTGGCTATAACAACAACTACCCTTCAGTGGGAAACCAAAATCAAAGATCCAATACACAAACAGATCCTCGTCCCCAGAATCCTTATTATCAGCCATCTGAGCAACCACCAGTTTCTTCATATGCTCATCCCCCTCCATCATACGGCCATTCACATCATCAGCCTCCGCCTCCATACCAAATCCCGCCAACATCAACTGCCCCGTACCCACCCCCTCAGGTCCATCAGCAGCAGCCACCAGCAAACCATGATTATGGTCAACCCGCCTATCCTGGATGGCGTGCTCCATACTACAATAATGCACCCACACACCCACAACAGCAACAACCTGGTCCTAGGCCTCCTTATACCATTCCATCTCCATATCCTCCACCTCACCAAGGTGGCTACTATAAGCAGCAATAG 2619 0.4532 MAASQSSSAVGNTNIMLAIFEKKTNTVDLYRPLRNYIAFHYSEREAQNLEDDLQTLKQLRSDLERHSDPSLPARRDLFITYFKALCQTETRFPISSEPDHVNALTFVWFDAFKPKQKASQQNIHLEKGAVLFNLAAVYSQIGLTFDRNTVDGRRQASHAFMAAAGSFGFLRENASMKISVGSSTTLDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLSQHFDKSWIVHVQLKTAIFYAEACYRYGLELHEKEEIAEEIARLKSAVSVLTEAKKNSRGAAAQLLDAINKLEVNINRNLERAVKENDRVYLMRVPPASSLSPLPAFAMVKPMVMSEVLDASKEKMFASLVPDNSAKALSRYTEMVDGIIRTQAEKLQQASELTRVRLREMELPDSILALEGNFTLPTNLKEDVEAVQISGGPAGLESELQQLKDLRRVNQELLVQTEELLQKESREDAQFRSQFGTKWTRPQSSTLTKNLLDRLNRFAGNLKQAAESDARIERSVREHAALMAILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLREMKRKDDILPKLMTSTGSYEDLFKKEIAKYDHISEDIAQNIEAQEQLLLQIQAQNDDFSVIFNLEDYKASREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKNTGGYNNNYPSVGNQNQRSNTQTDPRPQNPYYQPSEQPPVSSYAHPPPSYGHSHHQPPPPYQIPPTSTAPYPPPQVHQQQPPANHDYGQPAYPGWRAPYYNNAPTHPQQQQPGPRPPYTIPSPYPPPHQGGYYKQQ* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4127 872 MobiDBLite consensus disorder prediction 845 864 - -
Mtr1g4127 872 MobiDBLite consensus disorder prediction 735 775 - -
Mtr1g4127 872 Pfam BRO1-like domain 16 393 IPR004328 -
Mtr1g4127 872 CDD BRO1_Alix_like_1 16 371 - -
Mtr1g4127 872 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Mtr1g4127 872 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Mtr1g4127 872 CDD V_Alix_like_1 377 713 - -
Mtr1g4127 872 SMART BRO1_2 15 399 IPR004328 -
Mtr1g4127 872 Coils Coil 307 327 - -
Mtr1g4127 872 Coils Coil 279 299 - -
Mtr1g4127 872 MobiDBLite consensus disorder prediction 776 815 - -
Mtr1g4127 872 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Mtr1g4127 872 Gene3D alix/aip1 like domains 423 704 - -
Mtr1g4127 872 Coils Coil 39 66 - -
Mtr1g4127 872 PANTHER PCD6 INTERACTING PROTEIN-RELATED 7 855 IPR045251 GO:0071985
Mtr1g4127 872 Coils Coil 578 598 - -
Mtr1g4127 872 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Mtr1g4127 872 MobiDBLite consensus disorder prediction 735 872 - -
Mtr1g4127 872 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 7 855 - -
Mtr1g4127 872 Coils Coil 451 478 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4127 1 52799179 52817273 Mtr1g4127 1 52799179 52817273 ECH