Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4109 ATGGTGGTTTTCGGTGGGAAAAAGGTTCATCAAATCGTCACCGGCTTAGGCGGAAGCGGCCTTGGCCAGCTCGCCGTCGCCGTTGCTGTCTCTTTCCTTGTTCGTATCTTCTCTGCACCCGGTCCCGCTCTCTTACCGGAAAACGACGTCGACGACGATGTTCCAATCAACGACGGTGAAACTCCTCCTTCCACCGGAAAGGTTACCCCGGTCACAATCCGTTGGAACAATATTAATTGTTCACTTTCTGATAAATCCTCCAAGTCCGTGAGATTTTTGCTTAAAAATCTGAGTGGAGAAGCAAAACCGGGAAGATTATTAGCAATAATGGGACCTTCAGGTTCAGGGAAGACAACATTGCTCAATGTTCTTGCTGGTCAGCTATCAGCGTCACCTCGGCTTCATTTGAGTGGCCTTTTGGAGTTCAATGGAAAGCCTAGTTCCAGAAACGCTTACAAGTTTGCTTATGTGAGACAGGAGGATCTCTTCTTCTCACAGCTTACTGTGAGGGAAACGTTGTCTCTTGCTATAGAATTACAGCTTCACAACATATCTTCTGCCGAAGAGAGGGATGAATATGTCAACAATCTCCTTTTCAAAACAGGCCTGGTCAGCTGTGCTGATACTAATGTTGGTGATGCAAAAGTTCGTGGAATCAGCGGTGGAGAAAAGAAACGTCTATCTTTGGCATGTGAACTGCTTGCAAGCCCATCTGTTATATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAGGTTATGGAAACTCTCCGACAACTTGCACTCGATGGTCATACTGTAATATGCTCTATACATCAGCCAAGAGGATCAGTGTACAGCAAATTCGACGACATTGTCTTGCTAACTGATGGTTCACTTGTTTATGCTGGTCCTGCTGGTGATGAACCATTGACGTACTTCTCAAAATTCGGGTACCACTGCCCAGATCATGTTAATCCTGCAGAATTTTTGGCCGATCTTATATCCATAGACTACAGTTCTTCTGACAGTGTCTATTCCTCTCAAAAAAGGACCAATGGGCTTGTTGAGTCATTCTCACTAAGACAATCTACAATAATATATGCTACTCCAATTACTCTAGATGACCTCTCGAAAAGTAGAAAGAGAATCAGCAAGAGGAGTGTAGCAAAAACGAAAGGGGGCTGGTGGAAGCAATTTCGGTTGCTTCTTAGACGGGCATGGATGCAGGCTTCCCGTGATGCACCTACCAACAAAGTTCGGTCAAGGATGTCAATTGCATCAGCAGTTATCTTTGGTTCAGTTTTTTGGAGAATGGGAAAATCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTGCTGCTATAAACACAGCTATGGCTGCTCTCACTAAGACTGTAGGCGTGTTTCCGAAGGAACGGTCAATTGTTGATAGAGAACGTTCTAAAGGCTCCTATTCCTTGGGTCCCTATCTGTTTTCAAAACTATTGGCTGAGGCTCCCATTGGAGCAGCATTTCCATTAATGTTTGGTGCTGTTTTATACCCAATGGCACGTCTCCATCCCACTTTGATGAGATTTGGGAAATTCTGTGGAATCGTTACTGCAGAATCCTTTGCTGCATCTGCGATGGGTCTTACTGTTGGTGCTATGGTTCCAACCACTGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTATTTATAGTATTTGGTGGCTACTATGTCAACCCTGAGAATACCCCAATCATCTTCCGCTGGATTCCTAGTGTTTCTCTGATTAGATGGGCCTTTCAAGGACTTTGCATCAATGAATTCCGTGGTCTTCAATTTGATCATCAGCATTCATTTGATATTCAAACTGGAGAGCAGGCACTAGAACGTCTTTCCTTTGGAAAAAGTACAATTAGGGATACACTGCTAGCGCAAAATAGAATATTGTTATTTTGGTATTGTACCACCTACCTTCTCCTTGAGAAAAACAAGCCCAAATACCAGCAACTTGAAACAACCCCTCCTGACCACAGTAAACCACATTTAAAACTCGAGGAGTTAAATCCTGAACAAGTTGATCAGACACATGAAGCACCAGAGGTCAGCCAAGTTGGTTCGGACGAGCCGCTTGAGTCACCTGAATTAGACCCTGTTGGCTCATTTATCCTAGAAGGTGCTCAGTAG 2178 0.4449 MVVFGGKKVHQIVTGLGGSGLGQLAVAVAVSFLVRIFSAPGPALLPENDVDDDVPINDGETPPSTGKVTPVTIRWNNINCSLSDKSSKSVRFLLKNLSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSASPRLHLSGLLEFNGKPSSRNAYKFAYVRQEDLFFSQLTVRETLSLAIELQLHNISSAEERDEYVNNLLFKTGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLRQLALDGHTVICSIHQPRGSVYSKFDDIVLLTDGSLVYAGPAGDEPLTYFSKFGYHCPDHVNPAEFLADLISIDYSSSDSVYSSQKRTNGLVESFSLRQSTIIYATPITLDDLSKSRKRISKRSVAKTKGGWWKQFRLLLRRAWMQASRDAPTNKVRSRMSIASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERSIVDRERSKGSYSLGPYLFSKLLAEAPIGAAFPLMFGAVLYPMARLHPTLMRFGKFCGIVTAESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPSVSLIRWAFQGLCINEFRGLQFDHQHSFDIQTGEQALERLSFGKSTIRDTLLAQNRILLFWYCTTYLLLEKNKPKYQQLETTPPDHSKPHLKLEELNPEQVDQTHEAPEVSQVGSDEPLESPELDPVGSFILEGAQ* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4109 725 CDD ABCG_EPDR 70 301 - -
Mtr1g4109 725 MobiDBLite consensus disorder prediction 667 725 - -
Mtr1g4109 725 ProSitePatterns ABC transporters family signature. 219 233 IPR017871 GO:0005524
Mtr1g4109 725 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 674 - -
Mtr1g4109 725 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1 674 - -
Mtr1g4109 725 MobiDBLite consensus disorder prediction 674 691 - -
Mtr1g4109 725 MobiDBLite consensus disorder prediction 48 67 - -
Mtr1g4109 725 Gene3D - 65 307 IPR027417 -
Mtr1g4109 725 SMART AAA_5 103 296 IPR003593 -
Mtr1g4109 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 305 IPR027417 -
Mtr1g4109 725 Pfam ABC transporter 94 246 IPR003439 GO:0005524
Mtr1g4109 725 Pfam ABC-2 type transporter 276 333 IPR043926 GO:0140359
Mtr1g4109 725 Pfam ABC-2 type transporter 396 606 IPR013525 GO:0016020|GO:0140359
Mtr1g4109 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 73 319 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4109 Mtr-Chr1 52627992 52637509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4109 93 301 Calmodulin-binding Proteins AT2G36910 28.311 4.93e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4109 1 52627992 52637509 Mtr1g4109 1 52627992 52637509 ECH