Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4106 ATGACCATGACACTCTCACGATCATTCAGAAGATTTCCCAATCTTTTTCCACTCTCTAAATCAACTTCACATTTTGAATCACCCACGGTTCAATTCATCCAAAACCCATCTCGGTCACTCAAATTCCACATTTTCCCATTTCACACATCACTTCTTCATAAACCCAACAACCCACATGCCGAAACTATCTGCAGAATCCTTTCAACCACACCCGAATCACCTGTCGACGTCTCTCTTCGCAACTTTCCGGTGGAAGTCTCACCGGAGCTCGTCGTTGCTGTCTTGAACAAGCTCAGCAATGCTGGCATTCTCGCTCTTTCCTTCTTCCGTTGGGCCGAGAAACAGCAAGGTTTCAATCACAACACAGAGATTTTCCATGCTTTGATTGAAGCATTGGGTAAAATCAGACAGTTCAAGATGATTTGGAATTTGGTTGATGAAATGAAACAACGAAAGTTGCTCAATGGTGACACTTTTTCACTCATTGCTCGTCGTTATGTCAGAGCTAAAGTTATCAAGGAAGCATTGAAGACGTTTGAGAGAATGGAAAAATATGGATTGAAGCCTCAAATTTCGGATTTCAACAAGTTAATTGATGTTTTATGTAAGTCAAAGTTTCATGTTGAGAAAGCACAAGAACTGTTTGATAAAATGCGGCAATGGAATTTAGAGCCTAATCTTAAATCCTATACTATTTTGATAGAAGGTTGGAGTCAACAGCAAAATTTGTTGAAGGTTGATGAGGTTTGCAGGGAGATGAAGGATGATGGTTTTCAGCCTGATGTGGTTACTTATGGTATAATCATCAATGCTTATTGTAAGGCGAAAAAGTATGACGAGGCTATTGGTATTTATCATGACATGCTATCAAAGAATGTAAATCCTAGTCCTCATATATATTGTACTTTTATTACTGGTCTTGGTAATGGTAGTAGAATGGATGAAGCTTTTGAATTCTTTGAAAAATCTAAGGCTAGTGGGTTTCCGCCGGAAGCACCTACTTATAATGCTGTTGTTAGTGCTTACTGCTGGTCAATGCGGATCGATGATGCTTACAGGATTGTCGGTGAGATGAAAGAACTTGGGATTGGTCCGAATGCTCGAACGTATGATATAATACTTGTTCACTTGATAAAGGGTGGAAGAACCAAAGAAGCTTACTCGGTTTTCCAGAGGATGAGTAGTGAGACGGGGTGTGAGCCGAGTGTAAGCACATATGCGATCATGGTGAGAATGTTTTGTAATGAAAACCAATTGGATATGGCAATGGTAGTTTGGAATGAGATGAAAGACAAGGGAATCCTTCCGGGAATTCACATGTTCTCGACATTAATAATTTCCTTGTGTCATGAAAATAAGTTGGATGATGCATGCAGATACTTTCAACAAATGCTGGATGTTGGCATTCGGCCTACTGCTAATATGTTCAGTGCCTTCAAGAGAGCTCTAATGGCTGCGGGAATGGAAAATACTGTGATACATTTTGCAAAGAAAGTTGATAAACTGAGGAATACTCCATTAATTGCTTGA 1530 0.398 MTMTLSRSFRRFPNLFPLSKSTSHFESPTVQFIQNPSRSLKFHIFPFHTSLLHKPNNPHAETICRILSTTPESPVDVSLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKLLNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFAKKVDKLRNTPLIA* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4106 509 Pfam PPR repeat family 260 307 IPR002885 -
Mtr1g4106 509 Pfam PPR repeat family 334 374 IPR002885 -
Mtr1g4106 509 Pfam PPR repeat family 194 236 IPR002885 -
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Mtr1g4106 509 Gene3D Tetratricopeptide repeat domain 71 253 IPR011990 GO:0005515
Mtr1g4106 509 Gene3D Tetratricopeptide repeat domain 324 394 IPR011990 GO:0005515
Mtr1g4106 509 Gene3D Tetratricopeptide repeat domain 254 323 IPR011990 GO:0005515
Mtr1g4106 509 Gene3D Tetratricopeptide repeat domain 395 470 IPR011990 GO:0005515
Mtr1g4106 509 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 58 506 - -
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Mtr1g4106 509 PANTHER OS01G0505500 PROTEIN 58 506 - -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 263 296 IPR002885 -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 369 403 IPR002885 -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 194 226 IPR002885 -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 440 472 IPR002885 -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 299 330 IPR002885 -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 229 262 IPR002885 -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 158 189 IPR002885 -
Mtr1g4106 509 TIGRFAM PPR: pentatricopeptide repeat domain 405 437 IPR002885 -
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 401 IPR002885 -
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 225 IPR002885 -
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Mtr1g4106 509 Pfam PPR repeat 125 152 IPR002885 -
Mtr1g4106 509 Pfam PPR repeat 158 187 IPR002885 -
Mtr1g4106 509 Pfam Pentacotripeptide-repeat region of PRORP 383 498 IPR033443 -
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Mtr1g4106 509 SUPERFAMILY TPR-like 260 467 IPR011990 GO:0005515
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Mtr1g4106 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4106 Mtr-Chr1 52607539 52612270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4106 104 509 Miscellaneous Gene Families AT4G11690 24.384 8.97e-41 152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4106 1 52607539 52612270 Mtr1g4106 1 52607539 52612270 ECH