Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4101 ATGTTGTTGACAAATTTCTATTTCAACGCTATTTCCGTTTCTTTTCTCTCTTATATAAGAACAACCTCATTCACATTCTTTTTCATCAATTCACTTCCCAATTCTATAATCATCGTCATCATGGCACTCTTTCAAAAACCACATCTCTCTCTTGTCCTCGTGCTTTCTCTTTCGTTTTTGTCTCTTGCTCTTGCCGTAGACATGTCCATCATCGACTACGATGCAAAACTCGATGCTGCAAAGAACGAAAACCACCTCATGAAGTTGTATGAATCGTGGTTGATGAAGCATGGTAAGGTTTATAATGCATTAGGTGAGAAAGTACGTCGATTTGAAATCTTTAAGGACAACCTTAGGTATATTGAAAACCATAACAATTTTGAAAACCACTCCTTCAAGTTGGGTCTCACAAAGTTTGCTGATCTTACCAATGAAGAATATCGTTCCATGTTTTTGGGTACACGACCTCGGAAATCCAAAGGGTTGTTGTCTGCTTCCAAGAGTGATCGTTATGCTATTCGTGATAACGATGAATTGCCAGAGCACGTTGATTGGAGGGAGAAAGGTGCTGTCAATCCCGTCAAAGATCAAGGCCAATGTGGGAGTTGTTGGGCATTCTCAACGGTTGCAGCTGTGGAAGGGATCAATCAAATTGTAACCGGTGATCTCATATCTCTATCAGAACAAGAGTTGGTGGATTGTGATAGAGGTTATAACATGGGGTGCAATGGAGGTCTCATGGACTATGCTTTTGAGTTTATAATGAAAAATGGAGGCATCGATACAGAAGAGGATTACCCTTATCATGCTCGTGATAATACATGTGATGCATTCAGGAAAAATGCTCGGGTAGTCTCTATTGATGGATATGAAGATGTTCCTCAGAATGATGAGAAATCTTTGAAGAAGGCGGTTGCACATCAACCTGTTAGCGTTGCCATTGAAGCTGGTGGCAGGGCATTTCAACTTTACCAATCGGGTGTTTTTACTGGCATTTGTGGAACAGAACTTGATCACGGTGTTGCAGTGGTTGGATATGGAACAGAGAACGGGATCGATTACTGGTTAGTGAGGAACTCATGGGGTTCATCATGGGGTGAAAATGGCTACATTAAGATGGAGAGAAATTTGTTAACAAAAGAAACTGGCAAGTGTGGAATTGCAATGGAGGCATCATATCCTATCAAGAAGGGTCAGAACCCACCAAATCCTGGTCCTTCACCTCCATCACCTGTTCAGCCTTCAACTGTATGTGATGAATACTACTCTTGCTCAGCTGGAACCACATGTTGTTGCCTTTTTGAGTATGGAAACTTCTGCTTTGCTTGGGGATGCTGCCCTATTGAGTCTGCAACTTGCTGCGATGACGGTTCCAGCTGTTGCCCTCATGACTACCCGGTCTGCGATGTTGAAGCTGGAACTTGCCGATTGAGTAAAGATAATCCTTTTGGAGTTAAAGCTTTGAAAAGGACACCTGCAATAAGTACTGGGAATTGGACTGCACGAAAAGCCGCAATAAAACGCGCAATAAAAGGCAACTAA 1542 0.4215 MLLTNFYFNAISVSFLSYIRTTSFTFFFINSLPNSIIIVIMALFQKPHLSLVLVLSLSFLSLALAVDMSIIDYDAKLDAAKNENHLMKLYESWLMKHGKVYNALGEKVRRFEIFKDNLRYIENHNNFENHSFKLGLTKFADLTNEEYRSMFLGTRPRKSKGLLSASKSDRYAIRDNDELPEHVDWREKGAVNPVKDQGQCGSCWAFSTVAAVEGINQIVTGDLISLSEQELVDCDRGYNMGCNGGLMDYAFEFIMKNGGIDTEEDYPYHARDNTCDAFRKNARVVSIDGYEDVPQNDEKSLKKAVAHQPVSVAIEAGGRAFQLYQSGVFTGICGTELDHGVAVVGYGTENGIDYWLVRNSWGSSWGENGYIKMERNLLTKETGKCGIAMEASYPIKKGQNPPNPGPSPPSPVQPSTVCDEYYSCSAGTTCCCLFEYGNFCFAWGCCPIESATCCDDGSSCCPHDYPVCDVEAGTCRLSKDNPFGVKALKRTPAISTGNWTARKAAIKRAIKGN* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4101 513 SMART pept_c1 179 395 IPR000668 GO:0006508|GO:0008234
Mtr1g4101 513 Pfam Granulin 429 475 IPR000118 -
Mtr1g4101 513 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 197 208 IPR000169 -
Mtr1g4101 513 PANTHER CYSTEINE PROTEASE 74 425 - -
Mtr1g4101 513 SMART GRAN_2 418 475 IPR000118 -
Mtr1g4101 513 SMART Inhibitor_I29_2 90 147 IPR013201 -
Mtr1g4101 513 Gene3D Granulin 415 477 IPR037277 -
Mtr1g4101 513 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 74 425 - -
Mtr1g4101 513 SUPERFAMILY Granulin repeat 416 449 - -
Mtr1g4101 513 Gene3D Cysteine proteinases 68 397 - -
Mtr1g4101 513 PRINTS Papain cysteine protease (C1) family signature 197 212 IPR000668 GO:0006508|GO:0008234
Mtr1g4101 513 PRINTS Papain cysteine protease (C1) family signature 339 349 IPR000668 GO:0006508|GO:0008234
Mtr1g4101 513 PRINTS Papain cysteine protease (C1) family signature 354 360 IPR000668 GO:0006508|GO:0008234
Mtr1g4101 513 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 337 347 IPR025660 -
Mtr1g4101 513 Pfam Cathepsin propeptide inhibitor domain (I29) 90 147 IPR013201 -
Mtr1g4101 513 CDD Peptidase_C1A 180 394 IPR039417 -
Mtr1g4101 513 SUPERFAMILY Cysteine proteinases 84 395 IPR038765 -
Mtr1g4101 513 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 354 373 IPR025661 -
Mtr1g4101 513 Pfam Papain family cysteine protease 179 395 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4101 Mtr-Chr1 52563944 52566481 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4101 1 52563944 52566481 Mtr1g4101 1 52563944 52566481 ECH
Mtr1g0485 1 5603426 5608127 Mtr1g4101 1 52563944 52566481 ECH
Mtr3g3668 3 50558960 50564425 Mtr1g4101 1 52563944 52566481 ECH