Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3455 ATGAGTGAAGAATGTGGTGGAAACACTATTGCTACCTCTACTACTCCATTAAACTGGTGGTATCTTCAAGCAAATTCTCTTTCTTCTAATTGGAATGATGTTAAACATGCATGGAACAACCAAATGAATAATCCAAATTCTTCCTCTTCTTGTGAGGATCAAGATATATCAGTTTCTTCTACATCTTTCACCAATGCATCAAACCATTCAAGCCTCACTGTTGAATCCTCTCGAAGAGTATTCGTCGAGCCGCATGCACCACCTTCCTCCAACGACTTCATGGCCGAACATGCTTCGGATAACCAACTATGGAGTCATGTTTTATCAGGTGTTGATTCAAATGGAGAGTTACACAACAACCAAGAAATTGGAGAGAATTTCTTGGATGGACTATCATCAAAAACCATGACAAACACTATGTTTGATGAACCAGCTTGTGACTATTTGAAGAAACTTGATACAACAAGTTGGGAATATAATACTAGTGGTTCAACTTCATTCAATACTAATTTTGAGAAGCACTTAAATGGGTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACAAAATTATCCAATCTTGTAAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATTCACAAACAAATAACAATTTGTCTACTAATTTGAATAATTCTAATTCGTCCAATATGGATCATAATCACTACACACATGATTCTGACCCTAATTGTCATTTCAAACTACCTTTTGGTGATTCCACATCATGTACTATTAGAGAAGGAGTAGGTAATAAAATGTTCCCTAGTTGCCTTGATATTCAAGACATGAATAAGGTTAAGGAAGAATATCATCATCATGCAAGTGAAGTGATGCAAGGACATGTATTTAGAAAATCACTTAATCCAAATGGATATCTTGATGGATTTAACTCAGTGGGAGATCACAATGGCAAATTTTATGAAGGGTTGCCAAATATTTCACCATGCACCAAAAATTTCTCAGATGTTATATCCTTTAATAGTAGGCTTGGAAGGCCAGTTGTTGGAATCCATCCACAAAGGCCTAATATGAGATACTCAAACTTATCTGAGTCAAAGAAACAAGGGCTTCAAACACCATCACATATGAGAACCACTAATGGAAGAGGAGAGGGAACAACACGTGAAGTAAAGAAGAAAAGATCTGAAGAATCATCAGAAGCAAGTTTGAAAAAGCCTAAGCAAGATACTTCAACAACAAATTCATCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACTGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAACAAGTCCAGTTACTGAGCAACCCTTACTTGAAGGCAAATTCACACAAGGATCCAAGGGGAAGCTACTTCGATAGAAAAGATAAGGAGGATGCAAAGCTAGACCTTCGAAGTAAAGGTCTTTGTTTAGTTCCTACTTCATGTACCCCTATAGTTTATAGAGAGAACAATGGGCCAGATTACTGGACACCAGCGTATAGAGGATGTATGTATAGGTGA 1602 0.3764 MSEECGGNTIATSTTPLNWWYLQANSLSSNWNDVKHAWNNQMNNPNSSSSCEDQDISVSSTSFTNASNHSSLTVESSRRVFVEPHAPPSSNDFMAEHASDNQLWSHVLSGVDSNGELHNNQEIGENFLDGLSSKTMTNTMFDEPACDYLKKLDTTSWEYNTSGSTSFNTNFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDSQTNNNLSTNLNNSNSSNMDHNHYTHDSDPNCHFKLPFGDSTSCTIREGVGNKMFPSCLDIQDMNKVKEEYHHHASEVMQGHVFRKSLNPNGYLDGFNSVGDHNGKFYEGLPNISPCTKNFSDVISFNSRLGRPVVGIHPQRPNMRYSNLSESKKQGLQTPSHMRTTNGRGEGTTREVKKKRSEESSEASLKKPKQDTSTTNSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGSYFDRKDKEDAKLDLRSKGLCLVPTSCTPIVYRENNGPDYWTPAYRGCMYR* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3455 533 MobiDBLite consensus disorder prediction 347 423 - -
Mtr1g3455 533 MobiDBLite consensus disorder prediction 406 422 - -
Mtr1g3455 533 CDD bHLH_AtbHLH_like 426 468 IPR045239 -
Mtr1g3455 533 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 519 - -
Mtr1g3455 533 MobiDBLite consensus disorder prediction 357 382 - -
Mtr1g3455 533 PANTHER TRANSCRIPTION FACTOR BHLH111 32 519 - -
Mtr1g3455 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 475 IPR036638 GO:0046983
Mtr1g3455 533 MobiDBLite consensus disorder prediction 383 405 - -
Mtr1g3455 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 411 460 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3455 Mtr-Chr1 45917701 45921921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3455 28 533 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 30.597 9.06e-41 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3455 1 45917701 45921921 Mtr1g3455 1 45917701 45921921 ECH