Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3450 ATGACAGACACTACAGATGATATTGCTGAAGAAATCTCGTTCCAGAGCTTTGATGATGATTGTAGGTTGCTTGGTAATCTTCTCAACGACATTCTTCATCGTGAAGTTGGTACCACCTTTGTTGACAAACTCGAAAGAATTCGTGTCCTTGCTCAGAGTGCATGCAATATGAGGCAAGCAGGTATAGTGAACATGGCTGAGTTACTTGAGAAGCAGTTAGCTTCAGATTTGTCAAAGATGTCATTAGAAGAAGCTTTCACTCTTGCTCGTGCTTTCAGCCATTATCTTACTATGATGGGTATAGCTGAAACTCACCATAGGGTTCGTAAAGGAGGGAATATGGCACAAATTTCAAAATCTTGTGATGATGTGTTTAACCAGCTTGTGCAGGGTGGAGTTTCCCCGAAAGATCTTTATAACACAGTCTGCAAACAGGAGGTTGAGATTGTTCTTACAGCTCATCCCACACAAATTAATCGACGAACACTGCAGTACAAACACATTCGAATTGCTCATCTTTTGGATTATAACGATCGACCTGATCTTAGCCCTGAAGATCGAGAAATGCTGATTGAGGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGGCGCCAAAAACCCACTCCAGTTGATGAAGCTAGAGCTGGTTTGAATATAGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCATTATTTACGTCGAGTCAGCAATGCTTTAAAGAAGCATACTGGAAAGCCACTTCCACTGACTTGCACTCCCATAAAGTTTGGAACTTGGATGGGAGGTGATAGAGATGGAAATCCAAATGTGACCGCAAAGGTCACAAAAGCTGTTTCACTTCTATCTAGATGGATGGCTATTGACCTCTATATTCGGGAAGTGGATAGCCTCAGATTTGAGCTATCTATGAATCGGTGCAGTGATACGTTGTCAAGACTAGCACATGAAATTCTAGAAGAAGCTAAAGACGAGAATCGCCATGAGAGTTGGAATCAGTCCATGAATAGAAGTCAGTCACTTCCAACACAGCTTCCAGCTAGAGCTCATTTACCCTCTTTTGCTGAAAATGGTGAATCGCAGCATCCTAGACTAGACATCCCCGGACCTGATCACAAGGACGGTGGTATTTCTCCAAGTCCAACTACACTCAGAACTGGCAATCCCAGTATTAAAGTATCAGTAACAAGTTCAGAAAATTCCAATGGTGCTTCATCTTCAATTCCATCTTCTCCCTCTTACAACTCTAGTCAACCGCTTTCTCAGAGGAAATTTACAGAATCTCAGACAGGAAAGTCCAGTTTTCAGAAACTTTTGGAGCCACAGCTCCCTCAACTTCCTGGAATTGCTCCTTATAGAGTTGTCCTGGGAAATGTAAAGGATAAGCTTGAGAGAAGCCGTAGACGGTTAGAACTTCTTCTTGAGGATGTTGCATGTGACTATGATCCTTTGGATTATTATGAAACAGCTGACCAGCTTTTGGATCCTCTGCTCCTCAGTTATGAATCTCTGCAATCATGTGGGTCTGGGGTGCTAGCTGATGGTCGCCTTGCTGATCTCATTCGTAGAGTTGCAACCTTTGGAATGGTTTTAATGAAGCTTGATTTACGCCAGGAATCTGGGAGACATGCTGAAACACTTGATGCAGTTACAACATATTTGGATATGGGTACTTATAGTGAATGGGATGAAGATAAGAAATTGGACTTCTTAACAAGAGAGCTGAAAGGAAAGAGGCCACTAGTTCCTGTTAGTATGGAGGTTCCTGCTGATGTTAAGGAAGTCTTGGATACATTCCGAATCGCTGCTGAACTAGGGAGTGATTTTCTAGGAGCCTATGTGATATCTATGGCCTCAAGTGCAAGTGATGTCCTTGCAGTAGAGCTTTTACAGAAGGATGCAAGGCTTGCTGCTATTGGAGAATTGGGAAGAGCATGTCCTGGTGGAACGTTGCGGGTTGTCCCTCTATTTGAAACCGTGAAGGACCTGAGAGGAGCTGGTTCAGTTATCCGGAAACTTTTATCAATAGACTGGTACCGCGAGCACGTCATTAAGAACCACAATGGACATCAAGAGGTTATGGTTGGATATTCTGATTCTGGTAAAGATGCTGGCCGCTTCACTGCTGCTTGGGAACTTTACAAAGCTCAGGAGGATGTTGTAGCTGCTTGCAATGATTATGGTATTAAAGTTACACTGTTCCATGGCCGCGGAGGCAGTATTGGTCGAGGCGGTGGCCCTACATATCTGGCTATTCAGTCCCAACCACCTGGATCTGTGATGGGAACACTTCGGTCTACTGAGCAGGGAGAAATGGTAGAGGCTAAGTTTGGGTTGCCACAGATAGCTGTTAGACAACTTGAAATATACACAACTGCAGTATTACTTGCAACCCTTCGTCCACCTCTCCCACCCCGAGATGAAAATTGGCGTAGTCTCATGGAAGAAATCTCAGAGATCAGTTGCAAGTGTTACCGCAATGTAGTCTACGAAAATCCAGAATTCCTTTCTTACTTCCATGAAGCCACGCCTGAAGCAGAACTCGGCTTCCTCAACATAGGTAGTCGCCCTGCAAGAAGGAAGAACACAAAGGGAATTGGAAACCTTCGTGCTATTCCCTGGGTATTTGCGTGGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTTGGAGTTGGAGCAGGTTTGAAAGGTGCTTGTGAGAAAGGTCACAGCGAAGAACTAAAAGCAATGTACAAAGAATGGCCTTTCTTTCAAAGTACAATAGACCTTATTGAAATGGTTTTAGGTAAAGCAGACACTACTATAGCTAAGTACTATGATGAAGCCCTTGTATCAGAGGAGAGGCAAGAACTCGGTCGTGAGCTAAGAAACGAGCTCCTGACAGCTGAAAAGTTTGTGCTCGTGATTAGTGGGCACGAGAAACTTCAGCAGAATAATAGGAGCTTGAGGAGGTTGGTTGAGAACAGACTTCCATTTCTCAATCCCATGAACCTGTTGCAGGTGGAGATTCTGAAGAGGTTGAGGCGTGATGACGACAACCTTAAACTCAGAGATGCTTTGCTTATCACTGTAAATGGGATTGCTGCTGGGATGAGGAATACCGGTTAA 3120 0.4394 MTDTTDDIAEEISFQSFDDDCRLLGNLLNDILHREVGTTFVDKLERIRVLAQSACNMRQAGIVNMAELLEKQLASDLSKMSLEEAFTLARAFSHYLTMMGIAETHHRVRKGGNMAQISKSCDDVFNQLVQGGVSPKDLYNTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRPDLSPEDREMLIEDLVREITSIWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGTWMGGDRDGNPNVTAKVTKAVSLLSRWMAIDLYIREVDSLRFELSMNRCSDTLSRLAHEILEEAKDENRHESWNQSMNRSQSLPTQLPARAHLPSFAENGESQHPRLDIPGPDHKDGGISPSPTTLRTGNPSIKVSVTSSENSNGASSSIPSSPSYNSSQPLSQRKFTESQTGKSSFQKLLEPQLPQLPGIAPYRVVLGNVKDKLERSRRRLELLLEDVACDYDPLDYYETADQLLDPLLLSYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETLDAVTTYLDMGTYSEWDEDKKLDFLTRELKGKRPLVPVSMEVPADVKEVLDTFRIAAELGSDFLGAYVISMASSASDVLAVELLQKDARLAAIGELGRACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYREHVIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNDYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVEAKFGLPQIAVRQLEIYTTAVLLATLRPPLPPRDENWRSLMEEISEISCKCYRNVVYENPEFLSYFHEATPEAELGFLNIGSRPARRKNTKGIGNLRAIPWVFAWTQTRFVLPAWLGVGAGLKGACEKGHSEELKAMYKEWPFFQSTIDLIEMVLGKADTTIAKYYDEALVSEERQELGRELRNELLTAEKFVLVISGHEKLQQNNRSLRRLVENRLPFLNPMNLLQVEILKRLRRDDDNLKLRDALLITVNGIAAGMRNTG* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3450 1039 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Mtr1g3450 1039 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 697 709 IPR033129 -
Mtr1g3450 1039 Gene3D Phosphoenolpyruvate/pyruvate domain 409 533 - -
Mtr1g3450 1039 Gene3D Phosphoenolpyruvate/pyruvate domain 289 369 - -
Mtr1g3450 1039 Pfam Phosphoenolpyruvate carboxylase 446 1039 IPR021135 GO:0006099|GO:0008964|GO:0015977
Mtr1g3450 1039 Pfam Phosphoenolpyruvate carboxylase 19 333 IPR021135 GO:0006099|GO:0008964|GO:0015977
Mtr1g3450 1039 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 8 1039 - -
Mtr1g3450 1039 MobiDBLite consensus disorder prediction 359 437 - -
Mtr1g3450 1039 Coils Coil 460 484 - -
Mtr1g3450 1039 MobiDBLite consensus disorder prediction 383 437 - -
Mtr1g3450 1039 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 8 1039 IPR021135 GO:0006099|GO:0008964|GO:0015977
Mtr1g3450 1039 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Mtr1g3450 1039 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Mtr1g3450 1039 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Mtr1g3450 1039 MobiDBLite consensus disorder prediction 327 347 - -
Mtr1g3450 1039 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1039 IPR022805 GO:0006099|GO:0008964|GO:0015977
Mtr1g3450 1039 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 19 1039 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3450 Mtr-Chr1 45825478 45833765 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3450 1 45825478 45833765 Mtr1g3450 1 45825478 45833765 ECH