Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3445 ATGGCTTCGGACACAGCTTCTCGTTCGAGTTCCGCGGCCGATTCATACATTGGTTGCTTGATTAGTTTGACATCAAAAAGTGAGATCAGATACGAGGGTGTTCTCTACAACATCAACACCGATGAATCCAGTATTGGTCTCAAAAACGTGCGCTCTTTCGGAACTGAAGGAAGGAAAAAGGACGGTCCACAAATTCTGCCAGGTGACAAGGTCTATGAGTATATACTGTTCCGTGGGACGGACATCAAGGATTTACAGGTGAAATCTTCTCCACCTGTTCAGCCTGCTGTACCTACAAATACCGATCCAGCTATTATTCAGTCTCAGTATCCTCGCTTAGCCACAACATCTACAAGTTTACCAGCTGTAAGTGGATCTTTGACTGATGCTAGTCCTAATCCTAATACAACACAGCTTGGACACCCAGGGTCAAACTTTCAAGGGCCTTTGTATCAACCTGGAGGAAATGTAGTGTCATGGGGAGCTTCTTCGCCTGCTCCAAATGCAAATGGTGGTGGGCTTGCTATGCCAATGTATTGGCAAGGATATTATGGTGCCCCAAATGGGCTTCCTCAGTTACACCAGCAATCTTTGTTTCGACCTCCACCTGGCTTATCCATGCCTTCATCTATGCAGCAGCCAATGCCGTCATCTTTGCAGCAGCCACTGCCATCGTCTATGCAGCAGCCGATGCCATCATCTATGCAGCAGCCGATGCCTTCATCTATGCAGCAGCCGATGCCTTCATCTATGCAGCAGCCGATGCTTTCATCTATGCAGCAGCCATTGCAGTTTCCCAGTTTTAGTTCCTCATTACCAACTGGACCTTCAAATTTTCCAGAATTCCCATCAGCTTTCCTACCTGTGGGTACTAGTTCCCCTAACATAACATCTACTTCTGCACCTCCATTGAATCTTTCAACAACAATTTTACCTCCGGCACCTTCAGCTACACTAGCTCCTGAAACTTTTCAAGCATCAGTTTCAAACAAGGCACCTACTGTGTCACTTCCTGCTGCCACACTAGGTGCTAACTTGCCATCGCTAGCTCCTTTTACCAGCGGTGGTTCTGATATAAATGCTGCAGTACCATTGGCCAATAAACCTAATGCAATTTCAGGTTCAAGTTTGTCATACCAAACTGTACCCCAGCAGATGACTCCTTCAATTGTTGGCTCTTCAAATTCTGTCCGCACAGAACCACCAGTCCCTTCTCTGGTAACCCCAGCTCAATTATTGCAGTCTGGACAAACTGTAGCAGCTTCCTCCAAGCCTTCACAAACACCACATAAGGATGTTGAAGTGGTTCAGGTATCATCAACATCGGCTCCAGAGCCGTCTGTGCCTGTCGCTGCTGAATCTCAGCCACCAATACTTCCATTGCCAGCGACTTCTCGGCCAATTCACAGGCCCGGTGGAGCTTCTAACCAAACTCATCATGGCTATGGTTATAGGGGGCGTGGAAGAGGCAGAGGAATTGGGGGTTTCCGCCCAGCTGAAAGGTTCACTGAGGACTTTGACTTCACGGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCACCTAGGTAAAAGCAACAAGAAAGATGGGGAAGAAAATGCCAGTGATGAAGATGGCGGTCAAGATGAAGACAATGGTGATGTATCAAACTTGGAGGTTAAGCCTGTTTATAACAAGGATGATTTCTTTGACTCACTCTCCTGCAACTCGCTCAATCATGATCCACAAAATGGAAGGGTTAGATATTCGGAACAAATCAAGATGGATACTGAGACATTTGGTGATTTTTCAAGGCATCGTGGTGGCTGGGGTGGCCGTGGTCCGTGGCGCGGTGGTGGTGGTGGACGTGCCCGTGGTGGTTATTATGGAAGGGGGTATGGTGGCTATGGCGGAAGAGGAAGAGGAGGGGGACGTGGCATGCCAGGTGGCCGTTATTAG 1944 0.4779 MASDTASRSSSAADSYIGCLISLTSKSEIRYEGVLYNINTDESSIGLKNVRSFGTEGRKKDGPQILPGDKVYEYILFRGTDIKDLQVKSSPPVQPAVPTNTDPAIIQSQYPRLATTSTSLPAVSGSLTDASPNPNTTQLGHPGSNFQGPLYQPGGNVVSWGASSPAPNANGGGLAMPMYWQGYYGAPNGLPQLHQQSLFRPPPGLSMPSSMQQPMPSSLQQPLPSSMQQPMPSSMQQPMPSSMQQPMPSSMQQPMLSSMQQPLQFPSFSSSLPTGPSNFPEFPSAFLPVGTSSPNITSTSAPPLNLSTTILPPAPSATLAPETFQASVSNKAPTVSLPAATLGANLPSLAPFTSGGSDINAAVPLANKPNAISGSSLSYQTVPQQMTPSIVGSSNSVRTEPPVPSLVTPAQLLQSGQTVAASSKPSQTPHKDVEVVQVSSTSAPEPSVPVAAESQPPILPLPATSRPIHRPGGASNQTHHGYGYRGRGRGRGIGGFRPAERFTEDFDFTAMNEKFKKDEVWGHLGKSNKKDGEENASDEDGGQDEDNGDVSNLEVKPVYNKDDFFDSLSCNSLNHDPQNGRVRYSEQIKMDTETFGDFSRHRGGWGGRGPWRGGGGGRARGGYYGRGYGGYGGRGRGGGRGMPGGRY* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3445 647 ProSiteProfiles DFDF domain profile. 494 530 IPR025762 -
Mtr1g3445 647 MobiDBLite consensus disorder prediction 416 448 - -
Mtr1g3445 647 CDD LSm14_N 16 87 IPR025609 -
Mtr1g3445 647 ProSiteProfiles TFG box profile. 579 599 IPR025768 -
Mtr1g3445 647 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Mtr1g3445 647 MobiDBLite consensus disorder prediction 210 253 - -
Mtr1g3445 647 MobiDBLite consensus disorder prediction 523 555 - -
Mtr1g3445 647 MobiDBLite consensus disorder prediction 450 464 - -
Mtr1g3445 647 SMART FDF_2 500 599 IPR019050 -
Mtr1g3445 647 MobiDBLite consensus disorder prediction 198 253 - -
Mtr1g3445 647 SMART LSM14_2 10 110 IPR025609 -
Mtr1g3445 647 PANTHER PROTEIN DECAPPING 5-LIKE 5 221 - -
Mtr1g3445 647 PANTHER PROTEIN DECAPPING 5-LIKE 237 637 - -
Mtr1g3445 647 MobiDBLite consensus disorder prediction 416 491 - -
Mtr1g3445 647 PANTHER SCD6 PROTEIN-RELATED 5 221 - -
Mtr1g3445 647 PANTHER SCD6 PROTEIN-RELATED 237 637 - -
Mtr1g3445 647 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Mtr1g3445 647 Gene3D - 6 92 - -
Mtr1g3445 647 ProSiteProfiles FFD box profile. 557 572 IPR025761 -
Mtr1g3445 647 Pfam FDF domain 501 597 IPR019050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3445 Mtr-Chr1 45771126 45778019 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3445 1 45771126 45778019 Mtr1g3445 1 45771126 45778019 ECH