Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3441 ATGATACAAGAAGATCAAGGACAGTGTTCATCTCAAACAATCAATAACTTTGAAACTTATCAGCAAGAGCAGTTTCTCCTTCAACAACAGATGATGAGGCAACAAAATAGTGATCATCATATATTTGGTGGAGGAAGGTCTATGTTCCCTACAGCAGGAGGTGATCATAATCAAGTTTCACCAATCTTGCAACAAACATGGTCTATGCAACAACTTCATCATCATCATCATCCTTTCAACCCTCATGACCCTTTTGTTATTCCTCAACAACAAGCTTCACCTTATGCAAGTTTGTTCAATAGAAGGGTTCCTTCTCTTCAGTTTGCATATGATCATCATGCTGGTTCTGAGCATCTTAGGATCATATCAGATACACTTCAACATGGATCAGGTTCAGGACCTTTTGGTGGTTTTCAAGGTGAAGTTGGAAAGATGAGTGCTCAAGAAATTATGGAGGCTAAGGCTCTTGCTGCTTCCAAGAGTCATAGTGAAGCTGAAAGAAGACGCAGAGAGAGAATCAATAACCATCTTGCTAAGCTTCGCAGCTTGTTGCCAAGCACAACCAAAACAGACAAAGCATCATTGCTAGCAGAAGTTATACAACATGTAAAAGAATTGAAGCGTCAAACATCATTGATAGCAGAAACAAGTCCAGTTCCAACTGAATGTGATGAATTAACAGTAGATGCTGCAGCTGATGATGAAGATTATGGATCAAATGGAAATAAGTTTATCATAAAAGCCTCACTTTGCTGTGATGATAGGTCAGATCTTTTGCCTGAACTAATCAAGACATTGAAAGCATTAAGGTTAAGAACACTCAAAGCTGATATAACAACACTTGGAGGACGTGTTAAGAATGTTTTGTTCATCACTGGTGAAGAAGATGATCATGAATATTGCATTAGTTCAATACAAGAAGCACTGAAAGCTGTGATGGAGAAGAGTGTTGGAGATGAATCTGCTTCTGGAAGTGTTAAGAGACAAAGGACTAATATAATATCAATATCTAATTAA 1017 0.3795 MIQEDQGQCSSQTINNFETYQQEQFLLQQQMMRQQNSDHHIFGGGRSMFPTAGGDHNQVSPILQQTWSMQQLHHHHHPFNPHDPFVIPQQQASPYASLFNRRVPSLQFAYDHHAGSEHLRIISDTLQHGSGSGPFGGFQGEVGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTECDELTVDAAADDEDYGSNGNKFIIKASLCCDDRSDLLPELIKTLKALRLRTLKADITTLGGRVKNVLFITGEEDDHEYCISSIQEALKAVMEKSVGDESASGSVKRQRTNIISISN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3441 338 Pfam Helix-loop-helix DNA-binding domain 160 206 IPR011598 GO:0046983
Mtr1g3441 338 PANTHER TRANSCRIPTION FACTOR BHLH30 73 336 - -
Mtr1g3441 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 213 IPR036638 GO:0046983
Mtr1g3441 338 SMART finulus 163 212 IPR011598 GO:0046983
Mtr1g3441 338 CDD bHLH_AtAIG1_like 152 230 - -
Mtr1g3441 338 PANTHER TRANSCRIPTION FACTOR BHLH30 73 336 IPR045847 GO:0003700|GO:0006355
Mtr1g3441 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Mtr1g3441 338 Gene3D - 152 213 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3441 Mtr-Chr1 45717182 45720129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3441 95 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 65.152 1.63e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g3441 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3441 1 45717182 45720129 Mtr1g3441 1 45717182 45720129 ECH