Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3437 ATGGCTGCGTCTGGACCATCATGGTTGGTGGACAAAAGGAGAATTGCAACAAAAATAAAGCGTGCATCTGAAGCAACCGAAAAAGTTATATGGGAAAGCAATCCTACCAGAGCTTGCCCAAATTGTCAACATGTTATCGACAACAGTGATGTAACACAAGAGTGGCCTGGATTACCTAAAGGTGTAAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGAAGGAAATCTAGAACCCCATCCTTTCATCGATGAATTTATCTCTACTCTTCAAATGGATGATGGTATTTGTTATACTCATCCTAAGCGTTTACCAGGTGTTTCACAAGATGGAATTGCTTCACACTTTTTCCACAGAGCTATCAAAGCTTATAATACTGGAAGCCGAAAGCGTAGAAAAATATGTGGTCAAGATTTTGGTGATGTCCGCTGGCACAAGACCGGAAGGACTAAACCTATCCTCTTGAACGGGCTTCAGAAAGGCTGTAAAAAGATTATGGTTCTTTATATGACTCTGGAGAGTGGAGGAAAAGCTGAGAAAACTAACTGGGTTATGCATCAATATCATCTTGGAAGACAAGAGGATGAAAAGGATGGAGAATATGTTATTTCTAAAGTATTTTACCAGCAGCAGCAAGCCAAATTGGGCGAAAAAGATGACCAAAATGTTCCTGAAACCACGGAAGCAACTGTTGTAAAAGTGGATCCAGTCACTCCCAATTCTGTGACGCCTGAACCTCCTCGCAATGAGAAGCATTGTTCAGATGTAGACCAAGAACAAGAATCTCATCATAGTCCTCAGATTCTACCAAATCTTTCTCGGTTAGAATGGCTACTTGAAAGTCAGGATGATTGTGAAGAGCTTGCAAAAACTGACTCGTCGATGATAGAAACTCAAACTAATGTAGGCGTTGATAACTTTGACCTGTCGCATAATTTATTGGATTCACAGCAACTTGAAAGTCAGGATGATTGGGAAGAGCTTGCAAAAACTGACTCGTCGACGGTAGAAACTCAAACTAATGTAGGCGTCGATAACTTTGACCTGTCGCAGAATTTATTGGATTCACAGCAACTTGCGGAAGGACTTTCCTTGTTCGCAGATTTCTTTCAGAGCCAGTCTCCGAAAAGGGATGGGGAAAGCGGAGAGCAAATGGAACGACCTAGTCTTTCCGTATATGCTCATTTAGGAGCAGAGCAATTGAAGAAAGATATTGAAGAGTGTCAAAATCTTGAACTTAACACTACAAAGAAGAATGATATTGAAGAATGCCTTAATCTTGACGTTGAGACTGAAAAAAATCTCAACCTTGACACTGCAAATGTAGAGCTTGACTCACAACCTTCCGATATTCGATTAAGTCAACTGGAATTCAGCTCACAGGATAGCTACATTGCGTGGGGTGGTTGCAAGACAATCAACTAA 1446 0.408 MAASGPSWLVDKRRIATKIKRASEATEKVIWESNPTRACPNCQHVIDNSDVTQEWPGLPKGVKFDPSDQEIIWHLLAKVGEGNLEPHPFIDEFISTLQMDDGICYTHPKRLPGVSQDGIASHFFHRAIKAYNTGSRKRRKICGQDFGDVRWHKTGRTKPILLNGLQKGCKKIMVLYMTLESGGKAEKTNWVMHQYHLGRQEDEKDGEYVISKVFYQQQQAKLGEKDDQNVPETTEATVVKVDPVTPNSVTPEPPRNEKHCSDVDQEQESHHSPQILPNLSRLEWLLESQDDCEELAKTDSSMIETQTNVGVDNFDLSHNLLDSQQLESQDDWEELAKTDSSTVETQTNVGVDNFDLSQNLLDSQQLAEGLSLFADFFQSQSPKRDGESGEQMERPSLSVYAHLGAEQLKKDIEECQNLELNTTKKNDIEECLNLDVETEKNLNLDTANVELDSQPSDIRLSQLEFSSQDSYIAWGGCKTIN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3437 481 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 3 475 - -
Mtr1g3437 481 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Mtr1g3437 481 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Mtr1g3437 481 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 475 IPR044799 GO:0003700
Mtr1g3437 481 MobiDBLite consensus disorder prediction 240 276 - -
Mtr1g3437 481 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Mtr1g3437 481 MobiDBLite consensus disorder prediction 255 269 - -
Mtr1g3437 481 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3437 Mtr-Chr1 45669345 45674965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3437 30 223 NAC Transcription Factor Family AT1G28470 55.000 5.23e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g3437 NAM 1.4e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3437 1 45669345 45674965 Mtr1g3437 1 45669345 45674965 ECH